Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFCQI_RS01290 Genome accession   NZ_CP170722
Coordinates   242486..243523 (-) Length   345 a.a.
NCBI ID   WP_395119580.1    Uniprot ID   A0AB74UX88
Organism   Rhodanobacter sp. FW102-FHT14D06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 237486..248523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCQI_RS01275 (ACFCQI_01275) csrA 238587..238790 (-) 204 WP_395119577.1 carbon storage regulator CsrA -
  ACFCQI_RS01280 (ACFCQI_01280) alaS 239046..241673 (-) 2628 WP_395119578.1 alanine--tRNA ligase -
  ACFCQI_RS01285 (ACFCQI_01285) - 241753..242250 (-) 498 WP_395119579.1 regulatory protein RecX -
  ACFCQI_RS01290 (ACFCQI_01290) recA 242486..243523 (-) 1038 WP_395119580.1 recombinase RecA Machinery gene
  ACFCQI_RS01295 (ACFCQI_01295) - 243681..244190 (-) 510 WP_395119581.1 CinA family protein -
  ACFCQI_RS01300 (ACFCQI_01300) - 244299..244535 (-) 237 WP_395119582.1 hypothetical protein -
  ACFCQI_RS01305 (ACFCQI_01305) - 244813..245982 (-) 1170 WP_395119583.1 glycosyltransferase family 4 protein -
  ACFCQI_RS01310 (ACFCQI_01310) - 246001..247116 (-) 1116 WP_395119584.1 hypothetical protein -
  ACFCQI_RS01315 (ACFCQI_01315) - 247113..247835 (-) 723 WP_395119585.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36969.33 Da        Isoelectric Point: 5.5686

>NTDB_id=1058877 ACFCQI_RS01290 WP_395119580.1 242486..243523(-) (recA) [Rhodanobacter sp. FW102-FHT14D06]
MDDNKRKALTSALGQIEKQFGKGAVMRMGDRVNEAIETVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTMTLQAIA
SCQRAGGTAAFIDAEHALDPTYAEKLGVKVDDLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSGCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGDEIIGSE
TRVKVVKNKVAPPFRQCEFEILYGEGTSREGEIIELGVAQNLIDKSGAWYSYNGDRIGQGKENVRQFLRDNPAIANEIDK
QLRERLLVPVGKAAAAGPEEALEEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1058877 ACFCQI_RS01290 WP_395119580.1 242486..243523(-) (recA) [Rhodanobacter sp. FW102-FHT14D06]
ATGGATGACAACAAGCGCAAGGCGCTCACCTCCGCCCTCGGCCAGATCGAGAAGCAGTTCGGCAAGGGCGCCGTGATGCG
GATGGGTGACCGCGTCAACGAGGCGATCGAGACGGTTTCCACCGGTTCGCTGGGCCTGGACATCGCGTTGGGCGTCGGCG
GCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCGGAGTCCTCCGGCAAGACCACCATGACCCTGCAGGCCATCGCC
AGCTGCCAGCGCGCCGGCGGCACTGCCGCGTTCATCGACGCCGAGCACGCGCTCGATCCGACCTACGCGGAAAAGCTCGG
CGTCAAGGTCGACGACCTGCTGGTGTCGCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CGGGCGCGGTGGACATGGTGGTGGTCGACTCGGTCGCCGCGCTCACCCCGAAGGCGGAAATCGAGGGCGAAATGGGCGAC
TCCCACGTCGGCCTGCACGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGAAGTCCGGCTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACGCGC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGGTGAAGAAGGGCGACGAGATCATCGGCTCGGAA
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGTGCGAATTCGAAATCCTGTACGGCGAGGGCAC
CTCGCGCGAAGGCGAGATCATCGAGCTGGGCGTGGCGCAGAACCTGATCGACAAGTCCGGCGCCTGGTACAGCTACAACG
GCGACCGCATCGGCCAGGGCAAGGAGAACGTGCGCCAGTTCCTGCGCGACAACCCGGCCATCGCCAACGAGATCGACAAG
CAGCTGCGCGAACGCCTGCTGGTGCCGGTGGGCAAGGCGGCCGCGGCCGGTCCCGAAGAGGCGCTCGAGGAAGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.783

100

0.748
  recA Acinetobacter baylyi ADP1

74.926

98.261

0.736
  recA Ralstonia pseudosolanacearum GMI1000

72.254

100

0.725
  recA Acinetobacter baumannii D1279779

74.924

94.783

0.71
  recA Neisseria gonorrhoeae MS11

73.765

93.913

0.693
  recA Neisseria gonorrhoeae MS11

73.765

93.913

0.693
  recA Neisseria gonorrhoeae strain FA1090

73.765

93.913

0.693
  recA Vibrio cholerae strain A1552

72.036

95.362

0.687
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.036

95.362

0.687
  recA Glaesserella parasuis strain SC1401

70.679

93.913

0.664
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

95.942

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.443

94.783

0.62
  recA Helicobacter pylori strain NCTC11637

60.571

100

0.614
  recA Helicobacter pylori 26695

60.286

100

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

65.528

93.333

0.612
  recA Latilactobacillus sakei subsp. sakei 23K

60.588

98.551

0.597
  recA Streptococcus mutans UA159

62.462

94.203

0.588
  recA Streptococcus pyogenes NZ131

61.585

95.072

0.586
  recA Streptococcus mitis SK321

59.701

97.101

0.58
  recA Streptococcus pneumoniae R6

60.736

94.493

0.574
  recA Streptococcus pneumoniae Rx1

60.736

94.493

0.574
  recA Streptococcus pneumoniae D39

60.736

94.493

0.574
  recA Streptococcus pneumoniae TIGR4

60.736

94.493

0.574
  recA Streptococcus mitis NCTC 12261

61.3

93.623

0.574
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.623

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.104

94.783

0.551

Multiple sequence alignment