Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFYH6_RS09220 Genome accession   NZ_CP170704
Coordinates   1927463..1928542 (+) Length   359 a.a.
NCBI ID   WP_316344474.1    Uniprot ID   -
Organism   Clostridium sp. HCS.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922463..1933542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFYH6_RS09200 (ACFYH6_09200) - 1923915..1924493 (+) 579 WP_416178622.1 class I SAM-dependent methyltransferase -
  ACFYH6_RS09205 (ACFYH6_09205) - 1924514..1925386 (+) 873 WP_416178435.1 class I SAM-dependent methyltransferase -
  ACFYH6_RS09210 (ACFYH6_09210) - 1925376..1926599 (+) 1224 WP_416178436.1 radical SAM/SPASM domain-containing protein -
  ACFYH6_RS09215 (ACFYH6_09215) - 1926934..1927437 (+) 504 WP_316344461.1 CarD family transcriptional regulator -
  ACFYH6_RS09220 (ACFYH6_09220) recA 1927463..1928542 (+) 1080 WP_316344474.1 recombinase RecA Machinery gene
  ACFYH6_RS09225 (ACFYH6_09225) - 1928653..1929378 (+) 726 WP_316344462.1 YoaK family protein -
  ACFYH6_RS09230 (ACFYH6_09230) - 1929380..1930087 (-) 708 WP_369076191.1 FadR/GntR family transcriptional regulator -
  ACFYH6_RS09235 (ACFYH6_09235) hypB 1930411..1931082 (+) 672 WP_316344463.1 hydrogenase nickel incorporation protein HypB -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39159.22 Da        Isoelectric Point: 6.7421

>NTDB_id=1058610 ACFYH6_RS09220 WP_316344474.1 1927463..1928542(+) (recA) [Clostridium sp. HCS.1]
MDKDKLLAIETAMKQIERQFGKGSIMKLDNNSIMDIETISTGCLSLDIALGIGGVPRGRIIEIYGPESSGKTTIALHIIA
EAQKMGGSAAFIDAEHALDPSYAKNLGVNIDDLIVSQPDNGEQALEITEALVRSNAIDVLVVDSVAALVPRAEIEGEMGA
SHMGLQARLMSQALRKLTGSINKSKCVVIFINQLREKIGVMFGNPETTTGGRALKFYSSVRLDIRKIDTIKVGDNILGSR
ARIKVAKNKVAPPFKIAEFDIMYNEGISKEGNLIDIAVNEGIIDKSGSWFAYNDIRIGQGRENSKIYLKENKDIAIEVEN
AIKEKYNLPILNLDKKETVEKTVKAAKTAKKGKIEEEIS

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1058610 ACFYH6_RS09220 WP_316344474.1 1927463..1928542(+) (recA) [Clostridium sp. HCS.1]
ATTGATAAAGATAAGCTTTTAGCAATTGAAACAGCTATGAAGCAAATAGAAAGACAATTTGGAAAAGGATCTATTATGAA
ACTTGATAACAACTCCATAATGGATATTGAAACAATATCAACAGGCTGTTTATCATTAGATATAGCTTTAGGTATTGGTG
GAGTTCCAAGAGGAAGAATAATAGAAATATATGGACCTGAATCTTCAGGTAAAACTACAATTGCATTGCATATAATTGCA
GAAGCTCAAAAAATGGGGGGATCTGCAGCTTTTATAGATGCTGAACATGCATTAGATCCTTCTTACGCTAAAAACTTAGG
CGTAAATATTGATGACTTAATAGTGAGCCAACCAGATAATGGTGAACAAGCACTAGAAATAACAGAGGCTCTTGTTAGAT
CAAATGCTATAGATGTATTAGTTGTTGACTCTGTAGCAGCTTTAGTTCCAAGAGCAGAAATAGAAGGAGAAATGGGAGCT
TCTCATATGGGATTACAGGCCAGATTAATGTCTCAAGCTTTAAGAAAACTTACAGGGTCAATTAATAAATCAAAATGTGT
AGTAATATTTATTAATCAGTTAAGAGAAAAAATAGGAGTTATGTTTGGTAATCCAGAAACTACAACAGGTGGACGAGCTC
TTAAATTTTATTCATCAGTAAGATTAGATATTAGAAAAATAGATACCATAAAAGTTGGAGACAATATATTAGGTAGTAGA
GCTAGAATAAAAGTAGCAAAAAATAAAGTTGCTCCACCATTTAAAATAGCAGAGTTTGATATTATGTACAATGAAGGCAT
ATCAAAGGAAGGAAATCTAATAGATATAGCTGTAAATGAAGGAATAATAGATAAAAGTGGATCATGGTTTGCTTATAATG
ATATAAGAATAGGCCAAGGTAGAGAAAACTCAAAGATTTATCTAAAAGAAAATAAAGATATAGCTATTGAAGTAGAAAAT
GCTATAAAAGAAAAATATAATTTACCAATATTAAATTTAGATAAAAAAGAAACAGTAGAAAAAACAGTTAAAGCAGCTAA
AACAGCTAAAAAAGGTAAAATAGAAGAAGAAATAAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

67.692

90.529

0.613
  recA Vibrio cholerae strain A1552

60.894

99.721

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.894

99.721

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

64.742

91.643

0.593
  recA Streptococcus mitis NCTC 12261

58.989

99.164

0.585
  recA Streptococcus mitis SK321

58.708

99.164

0.582
  recA Glaesserella parasuis strain SC1401

66.139

88.022

0.582
  recA Streptococcus pneumoniae TIGR4

60.057

96.936

0.582
  recA Streptococcus pneumoniae Rx1

60.057

96.936

0.582
  recA Streptococcus pneumoniae D39

60.057

96.936

0.582
  recA Streptococcus pneumoniae R6

60.057

96.936

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.198

90.251

0.579
  recA Pseudomonas stutzeri DSM 10701

64

90.529

0.579
  recA Acinetobacter baumannii D1279779

64

90.529

0.579
  recA Neisseria gonorrhoeae MS11

63.58

90.251

0.574
  recA Neisseria gonorrhoeae MS11

63.58

90.251

0.574
  recA Neisseria gonorrhoeae strain FA1090

63.58

90.251

0.574
  recA Lactococcus lactis subsp. cremoris KW2

61.934

92.201

0.571
  recA Helicobacter pylori strain NCTC11637

63.077

90.529

0.571
  recA Helicobacter pylori 26695

63.077

90.529

0.571
  recA Acinetobacter baylyi ADP1

63.077

90.529

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.195

91.365

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.928

89.415

0.563
  recA Ralstonia pseudosolanacearum GMI1000

61.162

91.086

0.557
  recA Streptococcus pyogenes NZ131

61.3

89.972

0.552
  recA Streptococcus mutans UA159

60.615

90.529

0.549

Multiple sequence alignment