Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFYH6_RS08570 Genome accession   NZ_CP170704
Coordinates   1793008..1794060 (+) Length   350 a.a.
NCBI ID   WP_316342913.1    Uniprot ID   -
Organism   Clostridium sp. HCS.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1788008..1799060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFYH6_RS08555 (ACFYH6_08555) - 1788463..1790847 (+) 2385 WP_416179469.1 DNA translocase FtsK 4TM domain-containing protein -
  ACFYH6_RS08560 (ACFYH6_08560) rimO 1790931..1792268 (+) 1338 WP_316342912.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ACFYH6_RS08565 (ACFYH6_08565) pgsA 1792252..1792842 (+) 591 WP_316342918.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFYH6_RS08570 (ACFYH6_08570) recA 1793008..1794060 (+) 1053 WP_316342913.1 recombinase RecA Machinery gene
  ACFYH6_RS08575 (ACFYH6_08575) rny 1794366..1795910 (+) 1545 WP_316342914.1 ribonuclease Y -
  ACFYH6_RS08580 (ACFYH6_08580) - 1796070..1796330 (+) 261 WP_016206312.1 stage V sporulation protein S -
  ACFYH6_RS08585 (ACFYH6_08585) - 1796519..1796779 (+) 261 WP_136004919.1 HPr family phosphocarrier protein -
  ACFYH6_RS08590 (ACFYH6_08590) - 1796870..1797088 (-) 219 WP_416179468.1 DUF378 domain-containing protein -
  ACFYH6_RS08595 (ACFYH6_08595) purB 1797247..1798677 (+) 1431 WP_316342916.1 adenylosuccinate lyase -
  ACFYH6_RS08600 (ACFYH6_08600) - 1798815..1798982 (+) 168 WP_316342917.1 hypothetical protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37908.30 Da        Isoelectric Point: 5.9043

>NTDB_id=1058608 ACFYH6_RS08570 WP_316342913.1 1793008..1794060(+) (recA) [Clostridium sp. HCS.1]
MGNIDMDKLKAIENAMSQIEKQFGKGSVMKLGEDSSLNIEAISTGCLDLDIALGVGGVPKGRIVEIYGPESSGKTTVALH
IAAEAQKRGGAVAFIDAEHALDPSYARNLGVDTENLIVSQPDTGEQGLEIAEALVRSGAIDVIVVDSVAALVPRAEIDGE
MGDSHVGLQARLMSQALRKLTGTIQKTGCVAIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIDSIKQGESIV
GNRTRVKVMKNKVAPPFKQAEFDIMYNEGISRTGNIVDVGVKEGIVQKSGAWFSYGDIRLGQGRENAKQYLKDNPETALD
IENQIRSKYELPIMQETTVKAKKDKEKDKE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1058608 ACFYH6_RS08570 WP_316342913.1 1793008..1794060(+) (recA) [Clostridium sp. HCS.1]
ATGGGAAATATAGATATGGATAAGCTAAAAGCTATAGAAAATGCAATGAGTCAAATTGAAAAGCAATTTGGTAAGGGATC
AGTTATGAAACTAGGAGAAGATAGTTCTTTAAATATTGAAGCTATTTCAACTGGATGCCTTGATTTAGACATAGCTTTAG
GAGTAGGGGGAGTCCCTAAAGGAAGAATTGTAGAAATATACGGACCTGAAAGTTCAGGTAAAACAACAGTTGCATTGCAC
ATTGCAGCTGAAGCTCAAAAAAGAGGCGGAGCAGTTGCCTTTATAGATGCTGAACATGCTTTAGATCCAAGTTATGCTAG
AAATTTAGGCGTTGATACAGAAAATCTTATAGTTTCACAACCAGATACAGGAGAACAAGGTCTTGAAATTGCAGAAGCTT
TAGTTCGTTCAGGAGCCATAGACGTTATAGTAGTTGACTCTGTTGCAGCATTAGTTCCAAGAGCTGAAATAGATGGTGAA
ATGGGAGATTCTCACGTTGGTCTTCAAGCAAGACTTATGTCACAAGCTTTAAGAAAATTAACAGGTACTATCCAAAAGAC
TGGATGTGTAGCTATATTTATTAACCAATTAAGAGAAAAAGTTGGAGTTATGTTTGGTAATCCAGAAACAACAACTGGAG
GTAGAGCATTAAAATTCTATGCTTCTGTAAGACTTGATGTAAGAAGAATAGATTCTATTAAGCAAGGAGAAAGCATAGTA
GGTAACAGAACAAGAGTTAAGGTAATGAAGAATAAAGTTGCTCCACCATTTAAACAAGCTGAATTTGATATTATGTATAA
TGAAGGAATATCAAGAACAGGTAATATAGTTGATGTTGGTGTAAAAGAAGGAATAGTGCAAAAAAGTGGAGCTTGGTTCT
CTTATGGAGATATAAGGTTAGGACAAGGAAGAGAAAATGCTAAGCAATATTTAAAGGATAATCCAGAGACTGCACTTGAT
ATAGAAAATCAAATCAGAAGTAAATATGAATTACCTATAATGCAAGAAACTACTGTTAAAGCAAAGAAAGATAAAGAAAA
AGATAAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.615

92.857

0.637
  recA Helicobacter pylori strain NCTC11637

65.192

96.857

0.631
  recA Helicobacter pylori 26695

65.192

96.857

0.631
  recA Streptococcus pneumoniae D39

62.931

99.429

0.626
  recA Streptococcus pneumoniae Rx1

62.931

99.429

0.626
  recA Streptococcus pneumoniae TIGR4

62.931

99.429

0.626
  recA Streptococcus pneumoniae R6

62.931

99.429

0.626
  recA Streptococcus mutans UA159

63.006

98.857

0.623
  recA Streptococcus mitis SK321

63.824

97.143

0.62
  recA Streptococcus mitis NCTC 12261

63.824

97.143

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

94.571

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

63.69

96

0.611
  recA Neisseria gonorrhoeae strain FA1090

66.149

92

0.609
  recA Neisseria gonorrhoeae MS11

66.149

92

0.609
  recA Neisseria gonorrhoeae MS11

66.149

92

0.609
  recA Acinetobacter baylyi ADP1

61.739

98.571

0.609
  recA Pseudomonas stutzeri DSM 10701

65.231

92.857

0.606
  recA Streptococcus pyogenes NZ131

64.832

93.429

0.606
  recA Glaesserella parasuis strain SC1401

65.625

91.429

0.6
  recA Acinetobacter baumannii D1279779

64.615

92.857

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.308

92.857

0.597
  recA Ralstonia pseudosolanacearum GMI1000

65.109

91.714

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.087

92.286

0.591
  recA Vibrio cholerae strain A1552

64.087

92.286

0.591
  recA Lactococcus lactis subsp. cremoris KW2

63.19

93.143

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.438

91.429

0.58

Multiple sequence alignment