Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFDA4_RS07585 Genome accession   NZ_CP170661
Coordinates   1604160..1605215 (-) Length   351 a.a.
NCBI ID   WP_162162371.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CCARM 3A686     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1599160..1610215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA4_RS07565 (ACFDA4_07565) - 1599241..1601001 (-) 1761 WP_002495756.1 2-oxoacid:acceptor oxidoreductase subunit alpha -
  ACFDA4_RS07570 (ACFDA4_07570) - 1601114..1601908 (-) 795 WP_002446316.1 TIGR00282 family metallophosphoesterase -
  ACFDA4_RS07575 (ACFDA4_07575) - 1602071..1602286 (+) 216 WP_002446315.1 hypothetical protein -
  ACFDA4_RS07580 (ACFDA4_07580) rny 1602375..1603934 (-) 1560 WP_001829512.1 ribonuclease Y -
  ACFDA4_RS07585 (ACFDA4_07585) recA 1604160..1605215 (-) 1056 WP_162162371.1 recombinase RecA Machinery gene
  ACFDA4_RS07590 (ACFDA4_07590) - 1605386..1606531 (-) 1146 WP_162156143.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ACFDA4_RS07595 (ACFDA4_07595) pgsA 1606979..1607560 (-) 582 WP_002470245.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFDA4_RS07600 (ACFDA4_07600) - 1607589..1607981 (-) 393 WP_002489928.1 RodZ family helix-turn-helix domain-containing protein -
  ACFDA4_RS07605 (ACFDA4_07605) - 1608000..1608827 (-) 828 WP_002489921.1 YmfK family protein -
  ACFDA4_RS07610 (ACFDA4_07610) ymfI 1608981..1609685 (-) 705 WP_002446310.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38170.97 Da        Isoelectric Point: 4.9249

>NTDB_id=1058584 ACFDA4_RS07585 WP_162162371.1 1604160..1605215(-) (recA) [Staphylococcus epidermidis strain CCARM 3A686]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVDENENENEDDSPKTLFDE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=1058584 ACFDA4_RS07585 WP_162162371.1 1604160..1605215(-) (recA) [Staphylococcus epidermidis strain CCARM 3A686]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTCATTAAAAATATGGAAAAATCTTTTGGTAAAGGTGCCGTTATGAA
GTTAGGCGATAATAAAGGTCGCAGAGTATCAAGTACTTCAAGTGGTTCTGTCACAGTTGATAATGCATTAGGGGTTGGAG
GTTATCCTAAAGGAAGAATTATCGAAATATATGGACCTGAAAGTTCGGGTAAGACGACAGTAGCTTTACATGCTATCGCT
GAAGTACAAAAAAACGGTGGTGTAGCAGCATTTATCGATGCCGAACACGCTCTCGATCCAGTATATGCACAAGCATTAGG
TGTAGATATTGACAATTTATACTTATCTCAACCAGATCATGGTGAGCAAGGTCTTGAAATCGCCGAAGCTTTTGTTCGTA
GTGGTGCTGTGGACATTGTTGTTGTCGATTCAGTAGCAGCCTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCATTAAGAAAGTTATCAGGGGCTATTTCTAAATCTAATACTAC
AGCTATATTTATTAACCAAATTCGTGAAAAGGTTGGCGTGATGTTCGGGAATCCTGAAACAACGCCCGGTGGTAGAGCCC
TAAAATTCTATAGTTCTGTACGTTTAGAGGTAAGAAGAGCAGAGCAGTTAAAACAAGGTCAAGACATTGTAGGTAACAGA
ACCAAAATAAAAGTTGTGAAAAATAAAGTTGCACCTCCATTTAGAGTTGCAGAAGTAGATATTATGTATGGTCAAGGTAT
CTCTAAGGAAGGAGAGCTCATTGATTTAGGTGTAGAGAACGATATCGTTGATAAATCAGGTGCCTGGTATTCTTATAATG
GAGATAGAATGGGGCAAGGTAAAGAAAACGTCAAAAATTATCTTAAGGAAAATCCACAAATCAAAGAAGAAATTGACCGT
AAGTTACGTGAAAAGTTAGGTATTTTCGATGGTGATGTGGATGAAAATGAAAATGAAAATGAAGACGATTCACCAAAAAC
TTTATTTGATGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

92.877

0.715
  recA Latilactobacillus sakei subsp. sakei 23K

71.646

93.447

0.67
  recA Streptococcus pneumoniae TIGR4

65.805

99.145

0.652
  recA Streptococcus pneumoniae Rx1

65.805

99.145

0.652
  recA Streptococcus pneumoniae D39

65.805

99.145

0.652
  recA Streptococcus pneumoniae R6

65.805

99.145

0.652
  recA Streptococcus mutans UA159

63.408

100

0.647
  recA Streptococcus pyogenes NZ131

68.693

93.732

0.644
  recA Streptococcus mitis NCTC 12261

66.366

94.872

0.63
  recA Streptococcus mitis SK321

66.066

94.872

0.627
  recA Neisseria gonorrhoeae MS11

63.218

99.145

0.627
  recA Neisseria gonorrhoeae MS11

63.218

99.145

0.627
  recA Neisseria gonorrhoeae strain FA1090

63.218

99.145

0.627
  recA Acinetobacter baylyi ADP1

63.557

97.721

0.621
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.302

0.621
  recA Acinetobacter baumannii D1279779

66.258

92.877

0.615
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

93.732

0.615
  recA Helicobacter pylori 26695

64.939

93.447

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

92.877

0.604
  recA Vibrio cholerae strain A1552

65.031

92.877

0.604
  recA Helicobacter pylori strain NCTC11637

64.634

93.447

0.604
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.174

0.578
  recA Pseudomonas stutzeri DSM 10701

61.963

92.877

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.302

0.573
  recA Glaesserella parasuis strain SC1401

60.494

92.308

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

90.028

0.553

Multiple sequence alignment