Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFLK5_RS01375 Genome accession   NZ_CP170613
Coordinates   214176..215207 (+) Length   343 a.a.
NCBI ID   WP_004997434.1    Uniprot ID   Q7P9T0
Organism   Rickettsia sibirica strain TO85     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 209176..220207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFLK5_RS01345 (ACFLK5_01345) - 210394..211695 (+) 1302 WP_004997441.1 DUF5460 family protein -
  ACFLK5_RS01350 (ACFLK5_01350) - 212329..212568 (-) 240 WP_004997439.1 hypothetical protein -
  ACFLK5_RS01355 (ACFLK5_01355) - 212571..212729 (-) 159 WP_167316969.1 hypothetical protein -
  ACFLK5_RS01360 (ACFLK5_01360) - 213081..213269 (-) 189 WP_032850722.1 hypothetical protein -
  ACFLK5_RS01365 (ACFLK5_01365) - 213287..213451 (-) 165 WP_010977748.1 hypothetical protein -
  ACFLK5_RS01370 (ACFLK5_01370) - 213465..213875 (-) 411 WP_004997435.1 MFS transporter -
  ACFLK5_RS01375 (ACFLK5_01375) recA 214176..215207 (+) 1032 WP_004997434.1 recombinase RecA Machinery gene
  ACFLK5_RS01380 (ACFLK5_01380) fabG 215200..215925 (+) 726 WP_004997432.1 3-oxoacyl-ACP reductase FabG -
  ACFLK5_RS01385 (ACFLK5_01385) acpP 216092..216352 (+) 261 WP_008579292.1 acyl carrier protein -
  ACFLK5_RS01390 (ACFLK5_01390) fabF 216385..217671 (+) 1287 WP_004997426.1 beta-ketoacyl-ACP synthase II -
  ACFLK5_RS01395 (ACFLK5_01395) - 217953..219734 (+) 1782 WP_004997423.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37219.70 Da        Isoelectric Point: 6.5145

>NTDB_id=1058154 ACFLK5_RS01375 WP_004997434.1 214176..215207(+) (recA) [Rickettsia sibirica strain TO85]
MSNTDKERAIAAALAQIEKSYGKGSVMKLGQRPHVDIEAVSTGSLGLDIALGIGGVPKGRIIEIFGPESSGKTTLTLHLI
AEAQKKGGTCAFIDAEHALDPAYAKKLGVNIDELIISQPDTGEQALEIADTLIRSSGIDMIIIDSVAALVPKSEIEGEMG
DAQMASQARLMSQALRKLTASINRTNCIAVFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGS
QTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYKNVRIGQGRENVKQYLKEHPQISNEIE
KIIREKSSKITNINLDQTEEEND

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1058154 ACFLK5_RS01375 WP_004997434.1 214176..215207(+) (recA) [Rickettsia sibirica strain TO85]
ATGTCAAATACAGATAAGGAAAGAGCCATTGCCGCAGCACTCGCACAAATTGAAAAAAGCTACGGTAAAGGTTCGGTAAT
GAAACTAGGGCAGCGTCCGCATGTTGATATAGAGGCCGTATCAACCGGCTCACTTGGGCTAGATATAGCTCTTGGAATCG
GCGGTGTTCCCAAAGGTAGAATCATCGAAATTTTTGGTCCTGAAAGCTCAGGTAAAACCACTCTAACATTGCATTTAATT
GCAGAAGCTCAAAAAAAGGGTGGTACATGTGCTTTTATTGATGCCGAGCATGCATTAGACCCTGCTTATGCTAAAAAATT
AGGCGTAAATATTGATGAGCTTATTATTTCACAGCCCGATACAGGTGAACAAGCCCTAGAAATTGCCGATACGTTAATTC
GCTCCAGCGGTATTGATATGATAATAATAGATAGTGTTGCGGCTTTAGTACCGAAATCAGAGATTGAGGGCGAAATGGGT
GACGCTCAAATGGCTTCTCAAGCAAGGTTAATGAGCCAGGCTTTGCGTAAACTTACTGCATCAATTAATCGCACCAATTG
TATTGCTGTTTTCATCAATCAAATCAGAATGAAAATAGGTGTGATGTTCGGTAGTCCTGAAACCACGACAGGCGGTAATG
CCTTAAAATTCTATGCTTCTGTTAGGATCGATATAAGAAGAATCGGCTCCATTAAAGATAAAGAAGAAGTAATAGGCAGC
CAAACCAAAGTAAAAGTAGTCAAAAACAAAGTATCTCCTCCATTTAAAACTGCAGATTTTGATATAATGTACGGTTCAGG
TATTTCAAAAGAAGGCGAGATAATCGACCTTGGAGTTAAGCTTGATATTGTTGAGAAATCCGGCTCTTGGTTTTCCTACA
AGAACGTACGCATAGGTCAAGGGCGTGAAAACGTCAAACAATATTTAAAAGAACATCCACAAATTTCCAACGAAATTGAG
AAAATAATACGTGAAAAATCGTCAAAAATTACTAATATAAATCTTGACCAAACGGAGGAAGAAAATGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7P9T0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

67.055

100

0.671
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.879

96.21

0.653
  recA Glaesserella parasuis strain SC1401

69.906

93.003

0.65
  recA Pseudomonas stutzeri DSM 10701

68.827

94.461

0.65
  recA Neisseria gonorrhoeae MS11

69.47

93.586

0.65
  recA Neisseria gonorrhoeae MS11

69.47

93.586

0.65
  recA Neisseria gonorrhoeae strain FA1090

69.47

93.586

0.65
  recA Acinetobacter baumannii D1279779

68.323

93.878

0.641
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.465

96.501

0.641
  recA Vibrio cholerae strain A1552

66.465

96.501

0.641
  recA Ralstonia pseudosolanacearum GMI1000

70.874

90.087

0.638
  recA Helicobacter pylori 26695

65.741

94.461

0.621
  recA Helicobacter pylori strain NCTC11637

65.741

94.461

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

65.839

93.878

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.396

94.169

0.606
  recA Streptococcus pneumoniae D39

60.058

100

0.601
  recA Streptococcus pneumoniae R6

60.058

100

0.601
  recA Streptococcus pneumoniae TIGR4

60.058

100

0.601
  recA Streptococcus pneumoniae Rx1

60.058

100

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

58.017

100

0.58
  recA Streptococcus mitis NCTC 12261

60.923

94.752

0.577
  recA Streptococcus pyogenes NZ131

60.736

95.044

0.577
  recA Streptococcus mitis SK321

60.615

94.752

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.939

95.335

0.571
  recA Streptococcus mutans UA159

56.891

99.417

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.911

92.128

0.534

Multiple sequence alignment