Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFJIS_RS09660 Genome accession   NZ_CP170558
Coordinates   2061473..2062582 (+) Length   369 a.a.
NCBI ID   WP_390347762.1    Uniprot ID   -
Organism   Variovorax boronicumulans strain UC19_11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2056473..2067582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIS_RS09630 (ACFJIS_09630) - 2056599..2056799 (+) 201 WP_390347756.1 sporulation protein -
  ACFJIS_RS09635 (ACFJIS_09635) - 2056805..2057530 (-) 726 WP_390347758.1 HEAT repeat domain-containing protein -
  ACFJIS_RS09640 (ACFJIS_09640) - 2057527..2058969 (-) 1443 WP_369645662.1 sensor histidine kinase N-terminal domain-containing protein -
  ACFJIS_RS09645 (ACFJIS_09645) - 2059112..2060077 (+) 966 WP_185993769.1 hypothetical protein -
  ACFJIS_RS09650 (ACFJIS_09650) - 2060104..2060778 (-) 675 WP_056575150.1 response regulator transcription factor -
  ACFJIS_RS09655 (ACFJIS_09655) - 2060841..2061326 (-) 486 WP_062482795.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACFJIS_RS09660 (ACFJIS_09660) recA 2061473..2062582 (+) 1110 WP_390347762.1 recombinase RecA Machinery gene
  ACFJIS_RS09665 (ACFJIS_09665) recX 2062642..2063115 (+) 474 WP_390347764.1 recombination regulator RecX -
  ACFJIS_RS09670 (ACFJIS_09670) - 2063129..2063527 (+) 399 WP_307695263.1 SRPBCC family protein -
  ACFJIS_RS09675 (ACFJIS_09675) yiaA 2063540..2063980 (-) 441 WP_095747315.1 inner membrane protein YiaA -
  ACFJIS_RS09680 (ACFJIS_09680) - 2064095..2064817 (+) 723 WP_390347767.1 hypothetical protein -
  ACFJIS_RS09685 (ACFJIS_09685) - 2064951..2065902 (+) 952 Protein_1919 bestrophin family protein -
  ACFJIS_RS09690 (ACFJIS_09690) - 2065971..2067470 (+) 1500 WP_390347769.1 succinate CoA transferase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39272.06 Da        Isoelectric Point: 5.2193

>NTDB_id=1058002 ACFJIS_RS09660 WP_390347762.1 2061473..2062582(+) (recA) [Variovorax boronicumulans strain UC19_11]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE
SSGKTTLTLQVIASMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKIIDKSGAWYAYNGEKIGQGRDNAREF
LRENPDLSREIENKVRESLGIPLLAADAGTEPEKAEKPAKASKADKAAE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=1058002 ACFJIS_RS09660 WP_390347762.1 2061473..2062582(+) (recA) [Variovorax boronicumulans strain UC19_11]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGTGAAAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGCCTGGGCGAAGGCGAGGCGCTCGAAGACATCCAGGTGGTGTCCA
CCGGCTCGCTGGGCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCGTTGAAATCTACGGCCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTGATCGCCTCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGC
CGAGCACGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGATTCGCTGGTGCGCTCGGGTGCCGTCGACCTGATCGTGGTCGACTCGGTCGCCGCG
CTCACGCCCAAGGCTGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACGGCGACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTCAGCCCGCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCCA
AGATCATCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGACCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTCGCGGCCGA
CGCCGGCACCGAACCCGAGAAGGCCGAGAAGCCCGCCAAGGCATCGAAGGCCGACAAGGCGGCGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.232

92.412

0.751
  recA Neisseria gonorrhoeae strain FA1090

68.986

93.496

0.645
  recA Neisseria gonorrhoeae MS11

68.986

93.496

0.645
  recA Neisseria gonorrhoeae MS11

68.986

93.496

0.645
  recA Pseudomonas stutzeri DSM 10701

72.086

88.347

0.637
  recA Acinetobacter baylyi ADP1

72.086

88.347

0.637
  recA Glaesserella parasuis strain SC1401

71.914

87.805

0.631
  recA Acinetobacter baumannii D1279779

70.859

88.347

0.626
  recA Vibrio cholerae strain A1552

69.605

89.16

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.605

89.16

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.928

93.496

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.767

89.702

0.599
  recA Helicobacter pylori 26695

64.939

88.889

0.577
  recA Helicobacter pylori strain NCTC11637

64.939

88.889

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

88.618

0.575
  recA Streptococcus mutans UA159

59.718

96.206

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

63.333

89.431

0.566
  recA Lactococcus lactis subsp. cremoris KW2

61.934

89.702

0.556
  recA Streptococcus pyogenes NZ131

62.006

89.16

0.553
  recA Streptococcus pneumoniae D39

61.027

89.702

0.547
  recA Streptococcus pneumoniae TIGR4

61.027

89.702

0.547
  recA Streptococcus pneumoniae Rx1

61.027

89.702

0.547
  recA Streptococcus pneumoniae R6

61.027

89.702

0.547
  recA Streptococcus mitis SK321

60.725

89.702

0.545
  recA Streptococcus mitis NCTC 12261

60.725

89.702

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

86.992

0.534

Multiple sequence alignment