Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFJIW_RS10305 Genome accession   NZ_CP170554
Coordinates   2487702..2488739 (+) Length   345 a.a.
NCBI ID   WP_386071021.1    Uniprot ID   -
Organism   Tahibacter sp. UC22_41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2482702..2493739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIW_RS10280 (ACFJIW_10280) - 2482725..2482880 (+) 156 WP_386071016.1 hypothetical protein -
  ACFJIW_RS10285 (ACFJIW_10285) - 2482900..2483934 (-) 1035 WP_386071017.1 helix-turn-helix domain-containing protein -
  ACFJIW_RS10290 (ACFJIW_10290) - 2484093..2486489 (-) 2397 WP_386071018.1 winged helix-turn-helix domain-containing protein -
  ACFJIW_RS10295 (ACFJIW_10295) - 2486748..2486921 (-) 174 WP_386071019.1 hypothetical protein -
  ACFJIW_RS10300 (ACFJIW_10300) - 2487057..2487566 (+) 510 WP_386071020.1 CinA family protein -
  ACFJIW_RS10305 (ACFJIW_10305) recA 2487702..2488739 (+) 1038 WP_386071021.1 recombinase RecA Machinery gene
  ACFJIW_RS10310 (ACFJIW_10310) - 2488871..2489848 (+) 978 WP_386071022.1 RecX family transcriptional regulator -
  ACFJIW_RS10315 (ACFJIW_10315) alaS 2490013..2492673 (+) 2661 WP_386071023.1 alanine--tRNA ligase -
  ACFJIW_RS10320 (ACFJIW_10320) csrA 2493015..2493215 (+) 201 WP_386071024.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37283.82 Da        Isoelectric Point: 5.8990

>NTDB_id=1057963 ACFJIW_RS10305 WP_386071021.1 2487702..2488739(+) (recA) [Tahibacter sp. UC22_41]
MDDNKRKALASALSQIEKQFGKGTVMRMGDKVAEPIDAVSTGSFALDMALGIGGLPRGRVVEIYGPESSGKTTLTLQAIA
SCQKAGGTAAFVDAEHALDPSYAEKLGVNVDDLLVSQPDTGEQALEITDMLVRSGAVDMVVIDSVAALTPKAEIEGEMGE
MQVGLQARLMSQALRKLTGTIKKSGCLVIFINQLRMKIGNMMPGQNPETTTGGNALKFYASVRLDIRRIGSVKKGDEIIG
NETKIKVVKNKLAPPFKQVFTEILYGEGISRESELIDLGVDHKLVEKSGSWYSYSGERIGQGKDNARNFLKEHKDVAAQI
EAQLRIKMLPERRAAATPEFEPEEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1057963 ACFJIW_RS10305 WP_386071021.1 2487702..2488739(+) (recA) [Tahibacter sp. UC22_41]
ATGGATGACAACAAGCGCAAGGCGCTGGCTTCGGCCTTGAGCCAGATCGAAAAGCAGTTCGGCAAGGGCACGGTCATGCG
CATGGGCGACAAGGTCGCCGAGCCCATCGACGCGGTGTCGACCGGCTCGTTCGCGCTGGACATGGCCCTGGGCATCGGCG
GTCTGCCGCGCGGTCGCGTCGTGGAGATCTACGGACCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCAGGCCATCGCG
AGCTGCCAGAAGGCCGGCGGCACCGCCGCCTTCGTCGACGCCGAGCATGCGCTGGACCCGAGCTATGCCGAGAAGCTCGG
CGTCAACGTCGACGATCTGCTCGTCTCGCAGCCGGATACCGGCGAACAGGCGCTGGAAATCACCGACATGCTCGTGCGCT
CGGGCGCGGTCGACATGGTCGTCATCGACTCGGTCGCCGCGCTGACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAG
ATGCAGGTCGGCCTGCAGGCCCGCCTCATGAGCCAGGCCCTGCGCAAGCTGACCGGTACGATCAAGAAGTCCGGCTGCCT
CGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCAACATGATGCCGGGCCAGAATCCCGAGACGACGACCGGCGGCA
ACGCACTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCTCGGTCAAGAAGGGCGACGAGATCATCGGC
AACGAGACCAAGATCAAGGTCGTCAAGAACAAGCTCGCGCCGCCGTTCAAGCAGGTGTTCACCGAAATCCTCTACGGCGA
GGGCATCAGCCGGGAGAGCGAGCTCATCGACCTCGGCGTCGACCACAAGCTCGTCGAGAAGTCGGGCTCCTGGTACAGTT
ACAGCGGCGAGCGCATCGGCCAGGGCAAGGACAACGCGCGCAACTTCCTCAAGGAGCACAAGGATGTCGCCGCGCAGATC
GAAGCGCAGCTGCGCATCAAGATGTTGCCCGAGCGCCGCGCGGCGGCGACGCCGGAATTCGAGCCGGAGGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.175

99.13

0.696
  recA Ralstonia pseudosolanacearum GMI1000

71.557

96.812

0.693
  recA Acinetobacter baylyi ADP1

68.605

99.71

0.684
  recA Acinetobacter baumannii D1279779

69.605

95.362

0.664
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.976

96.232

0.664
  recA Vibrio cholerae strain A1552

68.976

96.232

0.664
  recA Neisseria gonorrhoeae strain FA1090

68.405

94.493

0.646
  recA Neisseria gonorrhoeae MS11

68.405

94.493

0.646
  recA Neisseria gonorrhoeae MS11

68.405

94.493

0.646
  recA Glaesserella parasuis strain SC1401

67.183

93.623

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.5

99.71

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

64.907

93.333

0.606
  recA Latilactobacillus sakei subsp. sakei 23K

61.111

99.13

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

96.522

0.588
  recA Helicobacter pylori strain NCTC11637

61.846

94.203

0.583
  recA Helicobacter pylori 26695

61.846

94.203

0.583
  recA Streptococcus mutans UA159

58.967

95.362

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.61

95.942

0.562
  recA Streptococcus pyogenes NZ131

58.485

95.652

0.559
  recA Streptococcus pneumoniae R6

58.537

95.072

0.557
  recA Streptococcus pneumoniae Rx1

58.537

95.072

0.557
  recA Streptococcus pneumoniae D39

58.537

95.072

0.557
  recA Streptococcus pneumoniae TIGR4

58.537

95.072

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.077

94.203

0.557
  recA Streptococcus mitis SK321

58.232

95.072

0.554
  recA Streptococcus mitis NCTC 12261

57.622

95.072

0.548

Multiple sequence alignment