Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFJI2_RS23720 Genome accession   NZ_CP170549
Coordinates   5340619..5341686 (-) Length   355 a.a.
NCBI ID   WP_107873885.1    Uniprot ID   -
Organism   Pseudoduganella sp. UC29_71     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5335619..5346686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJI2_RS23695 (ACFJI2_23695) - 5336284..5336967 (-) 684 WP_377702176.1 FHA domain-containing protein -
  ACFJI2_RS23700 (ACFJI2_23700) sucD 5337096..5337977 (-) 882 WP_056401948.1 succinate--CoA ligase subunit alpha -
  ACFJI2_RS23705 (ACFJI2_23705) sucC 5337991..5339160 (-) 1170 WP_107873894.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFJI2_RS23710 (ACFJI2_23710) - 5339237..5339644 (-) 408 WP_377702177.1 DUF2889 domain-containing protein -
  ACFJI2_RS23715 (ACFJI2_23715) recX 5340029..5340484 (-) 456 WP_377702178.1 recombination regulator RecX -
  ACFJI2_RS23720 (ACFJI2_23720) recA 5340619..5341686 (-) 1068 WP_107873885.1 recombinase RecA Machinery gene
  ACFJI2_RS23725 (ACFJI2_23725) - 5341845..5342537 (+) 693 WP_107873882.1 response regulator transcription factor -
  ACFJI2_RS23730 (ACFJI2_23730) - 5342568..5344091 (+) 1524 WP_377705894.1 sensor histidine kinase -
  ACFJI2_RS23735 (ACFJI2_23735) - 5344084..5344410 (+) 327 WP_377702179.1 DUF4212 domain-containing protein -
  ACFJI2_RS23740 (ACFJI2_23740) - 5344407..5346455 (+) 2049 WP_377702180.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37753.30 Da        Isoelectric Point: 5.8310

>NTDB_id=1057920 ACFJI2_RS23720 WP_107873885.1 5340619..5341686(-) (recA) [Pseudoduganella sp. UC29_71]
MDDKKGAVPAGEKAKALAAALAQIEKQFGKGSVMRMDASAPIEEVQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKLGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDMVVVDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGAGTSREGEIIDLGVEAKIVEKSGSWYSYNGERIGQGKDNARTFLVER
PELAHEIENKVRASLGVRELPGLGAEPAPKLKAVE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1057920 ACFJI2_RS23720 WP_107873885.1 5340619..5341686(-) (recA) [Pseudoduganella sp. UC29_71]
ATGGACGACAAAAAAGGCGCAGTACCCGCCGGCGAAAAAGCCAAGGCGCTTGCAGCAGCACTGGCTCAAATTGAAAAGCA
GTTCGGCAAGGGTTCCGTCATGCGCATGGACGCCAGCGCCCCCATCGAAGAAGTGCAGGTGGTCTCCACCGGCTCGCTGG
GCCTGGACATCGCACTGGGCGTGGGCGGCCTGCCGCGCGGCCGCGTGGTGGAAATCTACGGTCCGGAATCGTCGGGTAAA
ACCACGCTGACGCTGCAAACCATCGCCGAAATGCAGAAACTGGGCGGCACCTGCGCCTTCATCGACGCCGAACACGCGCT
GGACGTGGGCTACGCGCAGAAGCTGGGCGTGAACCTGCACGAGCTGCTGATCTCGCAGCCGGACACCGGCGAACAGGCCC
TGGAAATCTGCGACGCGCTGGTGCGCTCCGGTTCCGTGGACATGGTGGTGGTCGACTCCGTGGCCGCGCTGACGCCGCGC
GCCGAGATCGAAGGCGACATGGGCGACTCGCTGCCGGGCCTGCAAGCCCGTCTGATGTCGCAGGCGCTGCGCAAGCTGAC
CGGCTCCATCAACCGCACCAACACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTTCGC
CGGAGACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGCTCCATCAAG
TCGGGCGACGAGGTGATCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCGCCGTTCAAGGAAGCGCA
CTTCGACATCCTGTACGGCGCCGGCACCTCGCGCGAAGGCGAGATCATCGACCTGGGTGTGGAAGCGAAGATCGTCGAGA
AATCCGGCAGCTGGTACAGCTATAACGGCGAGCGCATCGGCCAGGGCAAGGACAACGCCCGCACCTTCCTGGTGGAGCGT
CCCGAGCTGGCGCACGAAATCGAAAACAAGGTGCGCGCCTCGCTGGGCGTGCGCGAACTGCCGGGCCTGGGCGCCGAACC
TGCACCCAAGCTCAAAGCGGTAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.226

94.648

0.797
  recA Neisseria gonorrhoeae MS11

74.847

91.831

0.687
  recA Neisseria gonorrhoeae MS11

74.847

91.831

0.687
  recA Neisseria gonorrhoeae strain FA1090

74.847

91.831

0.687
  recA Vibrio cholerae strain A1552

72.446

90.986

0.659
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.446

90.986

0.659
  recA Pseudomonas stutzeri DSM 10701

72.136

90.986

0.656
  recA Acinetobacter baylyi ADP1

70.898

90.986

0.645
  recA Acinetobacter baumannii D1279779

70.588

90.986

0.642
  recA Glaesserella parasuis strain SC1401

70.37

91.268

0.642
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.964

93.521

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

91.831

0.6
  recA Helicobacter pylori 26695

63.83

92.676

0.592
  recA Helicobacter pylori strain NCTC11637

63.526

92.676

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

63.333

92.958

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

91.831

0.586
  recA Streptococcus mutans UA159

62.349

93.521

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.997

92.113

0.58
  recA Streptococcus pyogenes NZ131

62.614

92.676

0.58
  recA Streptococcus pneumoniae D39

61.818

92.958

0.575
  recA Streptococcus pneumoniae Rx1

61.818

92.958

0.575
  recA Streptococcus pneumoniae R6

61.818

92.958

0.575
  recA Streptococcus pneumoniae TIGR4

61.818

92.958

0.575
  recA Streptococcus mitis SK321

61.515

92.958

0.572
  recA Streptococcus mitis NCTC 12261

61.515

92.958

0.572
  recA Lactococcus lactis subsp. cremoris KW2

61.515

92.958

0.572

Multiple sequence alignment