Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFJGY_RS07435 Genome accession   NZ_CP170547
Coordinates   1587157..1588158 (-) Length   333 a.a.
NCBI ID   WP_379969624.1    Uniprot ID   -
Organism   Epilithonimonas sp. UC225_85     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582157..1593158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJGY_RS07410 (ACFJGY_07410) lpxA 1582878..1583666 (+) 789 WP_028122968.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  ACFJGY_RS07415 (ACFJGY_07415) efp 1583695..1584258 (+) 564 WP_379969616.1 elongation factor P -
  ACFJGY_RS07420 (ACFJGY_07420) - 1584465..1585367 (+) 903 WP_379969618.1 LpxD N-terminal domain-containing protein -
  ACFJGY_RS07425 (ACFJGY_07425) sucD 1585477..1586349 (+) 873 WP_379969620.1 succinate--CoA ligase subunit alpha -
  ACFJGY_RS07430 (ACFJGY_07430) - 1586450..1587106 (+) 657 WP_379969622.1 porin family protein -
  ACFJGY_RS07435 (ACFJGY_07435) recA 1587157..1588158 (-) 1002 WP_379969624.1 recombinase RecA Machinery gene
  ACFJGY_RS07440 (ACFJGY_07440) - 1588323..1590809 (+) 2487 WP_379969626.1 T9SS type A sorting domain-containing protein -
  ACFJGY_RS07445 (ACFJGY_07445) gap 1590868..1591872 (-) 1005 WP_379969628.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ACFJGY_RS07450 (ACFJGY_07450) pfkA 1591931..1592917 (-) 987 WP_379969630.1 6-phosphofructokinase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35818.07 Da        Isoelectric Point: 6.1729

>NTDB_id=1057898 ACFJGY_RS07435 WP_379969624.1 1587157..1588158(-) (recA) [Epilithonimonas sp. UC225_85]
MSTTDDKKKALQLVLEKLDKTYGKGTVMTLGENSVDHTIEVIPSGSLGIDLALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRSYAAKLGVDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTGSISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKNGDEA
VGSRVKVKIVKNKVAPPFKQAEFDIMYGEGISKSGEILDTAVDLAVVKKSGSWFSYEETKLGQGRDAVKDLLKDNPELSE
EIEGKIREIIKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1057898 ACFJGY_RS07435 WP_379969624.1 1587157..1588158(-) (recA) [Epilithonimonas sp. UC225_85]
ATGAGTACTACAGACGATAAGAAAAAAGCACTGCAACTGGTGCTGGAAAAACTAGATAAAACCTATGGAAAAGGGACTGT
AATGACTTTGGGGGAAAACTCTGTGGATCATACCATAGAAGTAATTCCGTCCGGATCATTAGGGATTGACCTTGCTTTAG
GTGTTGGCGGATATCCAAGAGGAAGGGTGATAGAAATCTACGGTCCGGAATCTTCCGGTAAAACCACACTTACTTTACAC
GCTATTGCAGAAGCTCAAAAAGCTGGTGGAATCGCTGCTTTTATAGATGCCGAACACGCATTTGACAGAAGTTATGCCGC
AAAATTGGGTGTTGATCTGGAAAACCTGATCATCTCTCAGCCGGATAATGGTGAGCAGGCTTTGGAGATCGCAGATAATC
TGATCAGATCGGGAGCAATTGATATTGTAGTGATCGATTCTGTTGCGGCATTGACGCCAAAAGCAGAGATCGAAGGCGAA
ATGGGTGATTCTAAAATGGGATTGCACGCAAGGTTGATGTCTCAGGCTCTTCGAAAATTGACAGGTTCTATTTCCAGAAC
AAAATGTACTGTTATTTTCATCAATCAGCTTCGTGAAAAAATTGGGGTGATGTTTGGAAATCCTGAAACTACAACTGGTG
GAAATGCACTTAAATTCTATGCCTCAGTAAGGATTGACATCAGAAAAGCAAGTGCACCGATTAAAAATGGCGATGAAGCT
GTCGGAAGCCGTGTGAAAGTAAAAATTGTAAAAAACAAAGTGGCCCCGCCTTTCAAACAAGCTGAATTTGACATTATGTA
TGGCGAAGGAATTTCTAAATCGGGAGAGATTTTGGATACTGCGGTAGATCTTGCTGTGGTCAAGAAAAGCGGATCCTGGT
TCAGTTATGAAGAGACAAAACTTGGACAAGGTCGTGATGCTGTAAAAGATCTTTTAAAAGATAATCCTGAATTATCCGAA
GAAATCGAAGGTAAGATCCGAGAGATTATTAAAAATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.167

100

0.799
  recA Acinetobacter baylyi ADP1

64.134

98.799

0.634
  recA Acinetobacter baumannii D1279779

64.815

97.297

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

97.297

0.628
  recA Helicobacter pylori strain NCTC11637

62.84

99.399

0.625
  recA Helicobacter pylori 26695

62.84

99.399

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

64.087

96.997

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.497

97.898

0.622
  recA Neisseria gonorrhoeae MS11

63.497

97.898

0.622
  recA Neisseria gonorrhoeae MS11

63.497

97.898

0.622
  recA Ralstonia pseudosolanacearum GMI1000

66.559

93.393

0.622
  recA Glaesserella parasuis strain SC1401

62.883

97.898

0.616
  recA Pseudomonas stutzeri DSM 10701

61.656

97.898

0.604
  recA Streptococcus mitis NCTC 12261

60.923

97.598

0.595
  recA Streptococcus mitis SK321

60.923

97.598

0.595
  recA Streptococcus pyogenes NZ131

60.429

97.898

0.592
  recA Streptococcus pneumoniae Rx1

60.308

97.598

0.589
  recA Streptococcus pneumoniae D39

60.308

97.598

0.589
  recA Streptococcus pneumoniae R6

60.308

97.598

0.589
  recA Streptococcus pneumoniae TIGR4

60.308

97.598

0.589
  recA Vibrio cholerae strain A1552

59.146

98.498

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.146

98.498

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

59.752

96.997

0.58
  recA Lactococcus lactis subsp. cremoris KW2

59.202

97.898

0.58
  recA Streptococcus mutans UA159

59.202

97.898

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.881

98.198

0.559

Multiple sequence alignment