Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O1Q81_RS01360 Genome accession   NZ_CP170385
Coordinates   275533..276657 (+) Length   374 a.a.
NCBI ID   WP_386691867.1    Uniprot ID   -
Organism   Lonepinella sp. MS14436     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 270533..281657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q81_RS01335 (O1Q81_00262) dprA 271200..272306 (+) 1107 WP_386697815.1 DNA-processing protein DprA Machinery gene
  O1Q81_RS01340 (O1Q81_00263) pdxH 272539..273171 (-) 633 WP_386688824.1 pyridoxamine 5'-phosphate oxidase -
  O1Q81_RS01345 (O1Q81_00264) - 273187..273771 (-) 585 WP_386697817.1 aminotransferase class IV family protein -
  O1Q81_RS01350 (O1Q81_00265) - 273768..274751 (-) 984 WP_386697819.1 aminodeoxychorismate synthase component I -
  O1Q81_RS01355 (O1Q81_00266) - 274822..275463 (+) 642 WP_386697821.1 anthranilate synthase component II -
  O1Q81_RS01360 (O1Q81_00267) recA 275533..276657 (+) 1125 WP_386691867.1 recombinase RecA Machinery gene
  O1Q81_RS01365 (O1Q81_00268) recX 276729..277181 (+) 453 WP_386697823.1 recombination regulator RecX -
  O1Q81_RS01375 (O1Q81_00270) - 277437..277760 (+) 324 WP_386697825.1 helix-turn-helix domain-containing protein -
  O1Q81_RS01380 (O1Q81_00271) - 277760..279037 (+) 1278 WP_386691871.1 type II toxin-antitoxin system HipA family toxin -
  O1Q81_RS01385 (O1Q81_00272) selA 279081..280463 (+) 1383 WP_386697826.1 L-seryl-tRNA(Sec) selenium transferase -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40007.62 Da        Isoelectric Point: 4.7693

>NTDB_id=1056487 O1Q81_RS01360 WP_386691867.1 275533..276657(+) (recA) [Lonepinella sp. MS14436]
MAKDNKAKAKPTAKENNSQEDKAKALAAALGQIEKQFGKGAIMKLGDSQTLDVESISTGSIGLDVALGIGGLPMGRIVEI
FGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELFISQPDNGEQALEICDALVRSGAIDVIIVD
SVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLD
IRRIGAVKEGDEIIGNDTRVKVVKNKLAAPFRQAEFQILYGAGISKNGELIELGVKQKLVNKSGAWYAYNGEKIGQGKAN
AIKWLEDNPEAAAELEDKIKTALLENPEQALLPADDNDKDQSDEINDEVNDLDF

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1056487 O1Q81_RS01360 WP_386691867.1 275533..276657(+) (recA) [Lonepinella sp. MS14436]
ATGGCTAAAGATAACAAAGCGAAAGCAAAACCAACGGCAAAAGAAAATAACTCACAAGAAGACAAAGCAAAAGCACTGGC
AGCCGCTCTCGGTCAAATTGAAAAACAATTTGGCAAAGGCGCTATTATGAAGTTAGGCGATTCACAAACCCTTGATGTAG
AATCTATTTCAACAGGTTCAATCGGTTTAGATGTAGCATTAGGTATTGGTGGTTTGCCAATGGGGCGTATCGTTGAAATC
TTTGGTCCAGAATCATCAGGTAAAACTACATTAACCCTTTCCGTGATCGCACAAGCACAAAAAGCAGGTAAAGTCTGTGC
CTTTATTGATGCGGAACATGCCTTAGACCCAATTTATGCAGCAAAATTAGGGGTTGATGTCAAAGAACTGTTTATTTCTC
AACCTGATAATGGTGAACAAGCCCTAGAAATCTGTGATGCCTTAGTACGTTCAGGGGCGATTGATGTGATTATTGTGGAC
TCTGTCGCTGCATTAACCCCAAAAGCTGAAATTGAAGGGGATATGGGCGATTCTCACGTTGGTTTGCAAGCCCGTTTAAT
GTCACAAGCGTTGCGTAAATTAACCGGTCAAATTAAAAACTCTAACTGTTTAGTAGTGTTTATCAACCAAATTCGAATGA
AAATCGGTGTGATGTTTGGCAATCCAGAAACCACAACTGGCGGTAACGCACTAAAATTCTATTCATCTGTACGTTTAGAT
ATTCGCCGTATCGGTGCAGTGAAAGAGGGTGATGAGATTATTGGTAATGATACTCGGGTCAAAGTAGTGAAAAATAAACT
TGCAGCTCCGTTCCGTCAAGCCGAATTCCAAATTCTTTATGGTGCGGGTATCTCGAAAAATGGTGAGCTAATTGAACTTG
GTGTTAAACAAAAATTAGTCAACAAATCTGGGGCTTGGTATGCTTACAATGGTGAAAAAATCGGGCAAGGTAAAGCGAAT
GCGATCAAATGGTTAGAAGACAATCCTGAAGCAGCCGCAGAATTAGAAGATAAAATTAAGACAGCTTTATTAGAAAATCC
TGAACAAGCCTTGTTGCCAGCGGATGATAATGATAAAGATCAAAGTGATGAAATAAATGACGAAGTAAATGATTTAGATT
TCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

70.541

98.93

0.698
  recA Pseudomonas stutzeri DSM 10701

77.538

86.898

0.674
  recA Vibrio cholerae strain A1552

74.702

89.84

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.702

89.84

0.671
  recA Neisseria gonorrhoeae MS11

75.155

86.096

0.647
  recA Neisseria gonorrhoeae MS11

75.155

86.096

0.647
  recA Neisseria gonorrhoeae strain FA1090

75.155

86.096

0.647
  recA Acinetobacter baylyi ADP1

69.795

91.176

0.636
  recA Acinetobacter baumannii D1279779

72

86.898

0.626
  recA Ralstonia pseudosolanacearum GMI1000

69.512

87.701

0.61
  recA Helicobacter pylori 26695

62.687

89.572

0.562
  recA Helicobacter pylori strain NCTC11637

62.687

89.572

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

86.898

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.493

89.572

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.382

92.513

0.54
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

85.561

0.535
  recA Streptococcus mitis SK321

55.337

95.187

0.527
  recA Streptococcus pneumoniae Rx1

54.622

95.455

0.521
  recA Streptococcus pneumoniae TIGR4

54.622

95.455

0.521
  recA Streptococcus pneumoniae R6

54.622

95.455

0.521
  recA Streptococcus pneumoniae D39

54.622

95.455

0.521
  recA Streptococcus mutans UA159

56.196

92.781

0.521
  recA Streptococcus mitis NCTC 12261

54.52

94.652

0.516
  recA Latilactobacillus sakei subsp. sakei 23K

56.305

91.176

0.513
  recA Lactococcus lactis subsp. cremoris KW2

53.09

95.187

0.505
  recA Streptococcus pyogenes NZ131

57.362

87.166

0.5

Multiple sequence alignment