Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFCS9_RS04005 Genome accession   NZ_CP170332
Coordinates   818258..819319 (+) Length   353 a.a.
NCBI ID   WP_379823023.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. paracasei strain SMB092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 813258..824319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCS9_RS03985 (ACFCS9_03985) ymfI 814209..814937 (+) 729 WP_003569514.1 elongation factor P 5-aminopentanone reductase -
  ACFCS9_RS03990 (ACFCS9_03990) - 815024..815953 (+) 930 WP_003564169.1 helix-turn-helix domain-containing protein -
  ACFCS9_RS03995 (ACFCS9_03995) pgsA 815950..816543 (+) 594 WP_003569518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFCS9_RS04000 (ACFCS9_04000) cinA 816960..818201 (+) 1242 WP_379823022.1 competence/damage-inducible protein A Machinery gene
  ACFCS9_RS04005 (ACFCS9_04005) recA 818258..819319 (+) 1062 WP_379823023.1 recombinase RecA Machinery gene
  ACFCS9_RS04010 (ACFCS9_04010) rny 819614..821185 (+) 1572 WP_003657913.1 ribonuclease Y -
  ACFCS9_RS04015 (ACFCS9_04015) - 821279..821929 (-) 651 WP_003593868.1 YigZ family protein -
  ACFCS9_RS04020 (ACFCS9_04020) - 821957..823219 (+) 1263 WP_379823529.1 DEAD/DEAH box helicase -
  ACFCS9_RS04025 (ACFCS9_04025) - 823471..823893 (+) 423 WP_082257874.1 ComF family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37706.94 Da        Isoelectric Point: 5.5441

>NTDB_id=1056189 ACFCS9_RS04005 WP_379823023.1 818258..819319(+) (recA) [Lacticaseibacillus paracasei subsp. paracasei strain SMB092]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGQIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPWAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVKRDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIPQQAEV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1056189 ACFCS9_RS04005 WP_379823023.1 818258..819319(+) (recA) [Lacticaseibacillus paracasei subsp. paracasei strain SMB092]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAGAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACACGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACAAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGTGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
TATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTAAGAGAGATATTGTTGAAAAAGCAGGTTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCATCGGTCAGTGAAGATCAACCCGAAAT
ACCTCAACAGGCTGAAGTATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.098

98.3

0.768
  recA Bacillus subtilis subsp. subtilis str. 168

73.538

92.068

0.677
  recA Streptococcus mitis NCTC 12261

67.341

98.017

0.66
  recA Streptococcus mitis SK321

67.341

98.017

0.66
  recA Streptococcus mutans UA159

67.341

98.017

0.66
  recA Streptococcus pyogenes NZ131

70

93.484

0.654
  recA Streptococcus pneumoniae Rx1

68.882

93.768

0.646
  recA Streptococcus pneumoniae D39

68.882

93.768

0.646
  recA Streptococcus pneumoniae R6

68.882

93.768

0.646
  recA Streptococcus pneumoniae TIGR4

68.882

93.768

0.646
  recA Lactococcus lactis subsp. cremoris KW2

68.278

93.768

0.64
  recA Neisseria gonorrhoeae MS11

62.385

92.635

0.578
  recA Neisseria gonorrhoeae MS11

62.385

92.635

0.578
  recA Neisseria gonorrhoeae strain FA1090

62.385

92.635

0.578
  recA Ralstonia pseudosolanacearum GMI1000

64.856

88.669

0.575
  recA Acinetobacter baylyi ADP1

58.14

97.45

0.567
  recA Pseudomonas stutzeri DSM 10701

58.235

96.317

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

91.501

0.555
  recA Acinetobacter baumannii D1279779

60.748

90.935

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.716

92.635

0.544
  recA Helicobacter pylori 26695

58.182

93.484

0.544
  recA Helicobacter pylori strain NCTC11637

58.182

93.484

0.544
  recA Glaesserella parasuis strain SC1401

54.545

99.717

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.19

90.935

0.538
  recA Vibrio cholerae strain A1552

59.19

90.935

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.269

92.635

0.521

Multiple sequence alignment