Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFDBA_RS07505 Genome accession   NZ_CP170250
Coordinates   1580727..1581776 (-) Length   349 a.a.
NCBI ID   WP_381413572.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1575727..1586776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBA_RS07485 (ACFDBA_07480) - 1575804..1577564 (-) 1761 WP_002495756.1 2-oxoacid:acceptor oxidoreductase subunit alpha -
  ACFDBA_RS07490 (ACFDBA_07485) - 1577677..1578472 (-) 796 Protein_1440 TIGR00282 family metallophosphoesterase -
  ACFDBA_RS07495 (ACFDBA_07490) - 1578635..1578850 (+) 216 WP_002446315.1 hypothetical protein -
  ACFDBA_RS07500 (ACFDBA_07495) rny 1578939..1580501 (-) 1563 Protein_1442 ribonuclease Y -
  ACFDBA_RS07505 (ACFDBA_07500) recA 1580727..1581776 (-) 1050 WP_381413572.1 recombinase RecA Machinery gene
  ACFDBA_RS07510 (ACFDBA_07505) - 1581947..1583092 (-) 1146 WP_381413574.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ACFDBA_RS07515 (ACFDBA_07510) pgsA 1583542..1584124 (-) 583 Protein_1445 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFDBA_RS07520 (ACFDBA_07515) - 1584153..1584545 (-) 393 WP_002489928.1 RodZ family helix-turn-helix domain-containing protein -
  ACFDBA_RS07525 (ACFDBA_07520) - 1584564..1585391 (-) 828 WP_002457352.1 YmfK family protein -
  ACFDBA_RS07530 (ACFDBA_07525) ymfI 1585545..1586249 (-) 705 WP_002457353.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37927.79 Da        Isoelectric Point: 5.0992

>NTDB_id=1056045 ACFDBA_RS07505 WP_381413572.1 1580727..1581776(-) (recA) [Staphylococcus epidermidis strain PS21]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKNYLKENPKIKEEIDR
KLREKLGIFDGDVDENENEDDSPKTLFDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1056045 ACFDBA_RS07505 WP_381413572.1 1580727..1581776(-) (recA) [Staphylococcus epidermidis strain PS21]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTCATTAAAAATATGGAAAAATCTTTTGGTAAAGGTGCCGTTATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTATCAAGTACTTCAAGTGGTTCTGTCACAGTTGATAATGCATTAGGGGTTGGAG
GTTATCCTAAAGGAAGAATTATCGAAATATATGGACCTGAAAGTTCAGGTAAGACGACAGTAGCTTTACATGCTATCGCT
GAAGTACAAAAAAACGGTGGTGTAGCAGCATTTATCGATGCCGAACACGCTCTCGATCCAGTATATGCACAAGCATTAGG
TGTAGATATTGACAATTTATACTTATCTCAACCAGATCATGGTGAGCAAGGTCTTGAAATCGCCGAAGCTTTTGTTCGTA
GTGGTGCTGTGGACATTGTTGTTGTCGATTCAGTAGCAGCCTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCATTAAGAAAGTTATCAGGGGCTATTTCTAAATCTAATACTAC
AGCTATATTTATTAACCAAATTCGTGAAAAGGTTGGCGTGATGTTCGGGAATCCTGAAACAACGCCCGGTGGTAGAGCCC
TAAAATTCTATAGTTCTGTACGTTTAGAGGTAAGAAGAGCAGAGCAGTTAAAACAAGGTCAAGACATTGTAGGTAACAGA
ACCAAAATAAAAGTTGTGAAAAATAAAGTTGCACCTCCATTTAGAGTTGCAGAAGTAGATATTATGTATGGTCAAGGTAT
CTCTAAGGAAGGAGAGCTCATTGATTTAGGTGTAGAGAATGATATCGTTGATAAATCAGGTGCCTGGTATTCTTATAATG
GAGATAGAATGGGGCAAGGTAAAGAAAACGTCAAAAATTATCTTAAGGAAAATCCAAAAATCAAAGAAGAAATTGACCGT
AAGTTACGTGAAAAGTTAGGTATTTTCGATGGTGATGTGGATGAAAATGAAAATGAAGACGATTCACCAAAAACTTTATT
TGATGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.994

93.41

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

69.679

98.281

0.685
  recA Streptococcus pneumoniae TIGR4

65.23

99.713

0.65
  recA Streptococcus pneumoniae Rx1

65.23

99.713

0.65
  recA Streptococcus pneumoniae D39

65.23

99.713

0.65
  recA Streptococcus pneumoniae R6

65.23

99.713

0.65
  recA Streptococcus pyogenes NZ131

68.389

94.269

0.645
  recA Streptococcus mutans UA159

64.265

99.427

0.639
  recA Streptococcus mitis NCTC 12261

66.366

95.415

0.633
  recA Streptococcus mitis SK321

66.066

95.415

0.63
  recA Acinetobacter baylyi ADP1

63.768

98.854

0.63
  recA Neisseria gonorrhoeae MS11

63.953

98.567

0.63
  recA Neisseria gonorrhoeae MS11

63.953

98.567

0.63
  recA Neisseria gonorrhoeae strain FA1090

63.953

98.567

0.63
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.842

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.653

94.269

0.619
  recA Acinetobacter baumannii D1279779

65.951

93.41

0.616
  recA Helicobacter pylori 26695

64.939

93.983

0.61
  recA Vibrio cholerae strain A1552

65.031

93.41

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.031

93.41

0.607
  recA Helicobacter pylori strain NCTC11637

64.634

93.983

0.607
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.685

0.582
  recA Pseudomonas stutzeri DSM 10701

61.963

93.41

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.842

0.576
  recA Glaesserella parasuis strain SC1401

60.494

92.837

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

90.544

0.556

Multiple sequence alignment