Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFDHR_RS08970 Genome accession   NZ_CP170238
Coordinates   1807485..1808528 (+) Length   347 a.a.
NCBI ID   WP_039645995.1    Uniprot ID   A0A0A8HRJ5
Organism   Staphylococcus hyicus strain SC360     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1802485..1813528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHR_RS08945 (ACFDHR_08945) ymfI 1803398..1804102 (+) 705 WP_039646005.1 elongation factor P 5-aminopentanone reductase -
  ACFDHR_RS08950 (ACFDHR_08950) - 1804154..1805026 (+) 873 WP_039646003.1 DUF3388 domain-containing protein -
  ACFDHR_RS08955 (ACFDHR_08955) - 1805039..1805434 (+) 396 WP_107633195.1 RodZ family helix-turn-helix domain-containing protein -
  ACFDHR_RS08960 (ACFDHR_08960) pgsA 1805476..1806060 (+) 585 WP_039645999.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFDHR_RS08965 (ACFDHR_08965) - 1806163..1807326 (+) 1164 WP_167694303.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ACFDHR_RS08970 (ACFDHR_08970) recA 1807485..1808528 (+) 1044 WP_039645995.1 recombinase RecA Machinery gene
  ACFDHR_RS08975 (ACFDHR_08975) rny 1808965..1810524 (+) 1560 WP_039645993.1 ribonuclease Y -
  ACFDHR_RS08980 (ACFDHR_08980) - 1810876..1811094 (-) 219 WP_039645990.1 hypothetical protein -
  ACFDHR_RS08985 (ACFDHR_08985) - 1811283..1811666 (+) 384 WP_039645988.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37835.83 Da        Isoelectric Point: 5.3368

>NTDB_id=1055778 ACFDHR_RS08970 WP_039645995.1 1807485..1808528(+) (recA) [Staphylococcus hyicus strain SC360]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISRQGELIDLGVQHDIVDKSGAWYSYNGERMGQGKENVKLFLKEHPELENEIDR
KLREKLGIFDGDVEESEQESAQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1055778 ACFDHR_RS08970 WP_039645995.1 1807485..1808528(+) (recA) [Staphylococcus hyicus strain SC360]
TTGGATAATGAACGTCAAAAAGCACTCGATACAGTAATAAAAAATATGGAAAAATCTTTTGGGAAAGGTGCCGTCATGAA
ACTTGGCGAAAATAAAGATCGTCGTGTTTCTAGTGTATCTAGTGGTTCTGTTACATTAGATCATGCATTAGGTGTAGGTG
GCTATCCAAAAGGTCGTATTATTGAAGTTTATGGACCTGAAAGTTCAGGTAAAACAACCGTAGCATTACATGCCATTGCT
GAAGTGCAAAAAAATGGTGGTGTGGCTGCGTTTATTGATGCAGAGCATGCGCTTGATCCAGTCTACGCTCAAGCTTTAGG
TGTAGATATAGATAATTTATATTTATCGCAGCCAGATCATGGTGAGCAAGGGCTTGAGATAGCTGAAGCGTTTGTTCGTA
GCGGCGCGGTTGACATTATCATTGTTGACTCTGTGGCTGCATTAACTCCAAAAGCTGAGATCGAAGGCGAAATGGGGGAC
ACACATGTTGGTTTACAAGCACGTTTAATGTCTCAAGCATTACGTAAATTGTCAGCAGCAATTTCAAAATCGAATACAAC
GGCAATCTTTATTAACCAAATTCGAGAAAAAGTAGGCGTAATGTTCGGCAATCCAGAAACTACGCCAGGTGGTCGAGCTT
TAAAGTTCTACAGTTCTGTTCGATTGGAAGTACGTCGTGCTGAACAATTAAAACAAGGACAAGATATTGTAGGTAACCGT
ACGAAAATCAAAGTGGTTAAAAATAAAGTTGCACCTCCATTCAAAGTGGCTGAAGTAGATATTATGTATGGTCAAGGTAT
TTCTAGACAAGGTGAACTGATCGACTTAGGTGTGCAACATGATATTGTTGATAAGTCAGGTGCTTGGTATTCTTACAATG
GTGAACGAATGGGTCAAGGTAAAGAAAACGTGAAATTATTCTTAAAAGAACATCCTGAATTAGAAAATGAAATTGACCGT
AAACTCCGTGAAAAATTAGGTATTTTTGATGGTGATGTTGAAGAAAGTGAACAAGAGTCAGCTCAAACTTTATTTGATGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8HRJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

93.948

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

69.828

100

0.7
  recA Streptococcus pyogenes NZ131

69.605

94.813

0.66
  recA Streptococcus mutans UA159

65.616

100

0.66
  recA Streptococcus pneumoniae Rx1

66.569

98.271

0.654
  recA Streptococcus pneumoniae D39

66.569

98.271

0.654
  recA Streptococcus pneumoniae R6

66.569

98.271

0.654
  recA Streptococcus pneumoniae TIGR4

66.569

98.271

0.654
  recA Streptococcus mitis NCTC 12261

64.74

99.712

0.646
  recA Streptococcus mitis SK321

64.74

99.712

0.646
  recA Lactococcus lactis subsp. cremoris KW2

65.559

95.389

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

98.847

0.622
  recA Acinetobacter baumannii D1279779

65.031

93.948

0.611
  recA Acinetobacter baylyi ADP1

64.417

93.948

0.605
  recA Neisseria gonorrhoeae MS11

63.526

94.813

0.602
  recA Neisseria gonorrhoeae MS11

63.526

94.813

0.602
  recA Neisseria gonorrhoeae strain FA1090

63.526

94.813

0.602
  recA Vibrio cholerae strain A1552

64.11

93.948

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.11

93.948

0.602
  recA Helicobacter pylori 26695

63.11

94.524

0.597
  recA Helicobacter pylori strain NCTC11637

62.805

94.524

0.594
  recA Ralstonia pseudosolanacearum GMI1000

64.856

90.202

0.585
  recA Pseudomonas stutzeri DSM 10701

61.656

93.948

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.389

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.382

91.931

0.573
  recA Glaesserella parasuis strain SC1401

61.3

93.084

0.571

Multiple sequence alignment