Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACFDAU_RS03495 Genome accession   NZ_CP170197
Coordinates   690690..691712 (-) Length   340 a.a.
NCBI ID   WP_124705080.1    Uniprot ID   A0A401JF86
Organism   Sulfuriferula sp. GW1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 685690..696712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDAU_RS03475 (ACFDAU_03475) - 686923..687957 (-) 1035 WP_413438635.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ACFDAU_RS03480 (ACFDAU_03480) - 687954..688706 (-) 753 WP_413438636.1 DUF2334 domain-containing protein -
  ACFDAU_RS03485 (ACFDAU_03485) - 688699..689814 (-) 1116 WP_413438637.1 glycosyltransferase family 4 protein -
  ACFDAU_RS03490 (ACFDAU_03490) recX 690099..690545 (-) 447 WP_413438638.1 recombination regulator RecX -
  ACFDAU_RS03495 (ACFDAU_03495) recA 690690..691712 (-) 1023 WP_124705080.1 recombinase RecA Machinery gene
  ACFDAU_RS03500 (ACFDAU_03500) - 691888..692382 (-) 495 WP_413438639.1 CinA family protein -
  ACFDAU_RS03505 (ACFDAU_03505) - 692379..692867 (-) 489 WP_413438640.1 phosphatidylglycerophosphatase A -
  ACFDAU_RS03510 (ACFDAU_03510) thiL 692848..693807 (-) 960 WP_413438641.1 thiamine-phosphate kinase -
  ACFDAU_RS03515 (ACFDAU_03515) nusB 693823..694260 (-) 438 WP_413438642.1 transcription antitermination factor NusB -
  ACFDAU_RS03520 (ACFDAU_03520) ribH 694257..694724 (-) 468 WP_413438643.1 6,7-dimethyl-8-ribityllumazine synthase -
  ACFDAU_RS03525 (ACFDAU_03525) ribBA 694787..695878 (-) 1092 WP_413438644.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  ACFDAU_RS03530 (ACFDAU_03530) - 695875..696471 (-) 597 WP_413438645.1 riboflavin synthase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36492.83 Da        Isoelectric Point: 5.5201

>NTDB_id=1055500 ACFDAU_RS03495 WP_124705080.1 690690..691712(-) (recA) [Sulfuriferula sp. GW1]
MDENRSKALAAALAQIEKSFGKGSIMRLGDGEVVRDIQVVSTGSLGLDIALGVGGLPRGRVVEIFGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDPQYAQKLGVNVSDLLISQPDTGEQALEIADMLVRSGSVDVVVIDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVIGS
ETRVKVVKNKVAPPFKQAEFDILYGEGISREGEIIELGVEHKLVEKSGAWYAYNGEKIGQGKDNAREYLREHPEIAHEIE
NKVRAAIGIVPMAATAEAAE

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=1055500 ACFDAU_RS03495 WP_124705080.1 690690..691712(-) (recA) [Sulfuriferula sp. GW1]
ATGGACGAAAACAGAAGCAAAGCCCTCGCCGCGGCCCTGGCGCAAATCGAAAAAAGCTTCGGCAAAGGCTCCATCATGCG
CCTAGGCGATGGCGAAGTCGTACGCGATATTCAGGTGGTATCCACCGGTTCGCTTGGTCTGGATATTGCGCTGGGCGTCG
GCGGTTTGCCGCGCGGTCGTGTCGTTGAAATCTTCGGGCCGGAATCCTCAGGCAAAACCACCCTCACCCTGCAGGTGATC
GCCGAAATGCAGAAACTGGGCGGCACCGCAGCGTTCATCGATGCCGAGCACGCCCTCGACCCGCAATACGCGCAAAAGCT
CGGCGTGAATGTCTCCGACCTGCTCATCTCGCAGCCCGATACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGC
GCTCCGGTTCGGTGGACGTGGTGGTGATCGACTCGGTCGCGGCGTTGACTCCCAAGGCCGAAATCGAGGGCGAAATGGGC
GACTCGCATATGGGTCTGCAAGCCCGCCTGATGAGCCAGGCGCTGCGCAAACTCACCGGCAACATCAAGCGCACCAATAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTCATGTTCGGCAACCCGGAGACCACCACTGGCGGCAACG
CACTCAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGCACCGGCGCGATCAAGAAGGGCGATGAAGTGATCGGCAGC
GAAACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCACCGCCGTTCAAGCAGGCTGAATTCGATATCCTTTACGGCGAAGG
CATCTCGCGCGAGGGGGAAATCATCGAACTCGGCGTGGAACACAAGCTGGTGGAAAAATCCGGTGCCTGGTATGCCTATA
ACGGCGAAAAAATCGGCCAGGGCAAAGACAATGCACGCGAATACCTGCGCGAGCATCCTGAAATCGCCCACGAGATTGAA
AATAAAGTGCGCGCAGCCATCGGGATCGTGCCGATGGCTGCTACGGCAGAAGCCGCTGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A401JF86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.846

95.588

0.782
  recA Pseudomonas stutzeri DSM 10701

77.676

96.176

0.747
  recA Vibrio cholerae strain A1552

75.926

95.294

0.724
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.926

95.294

0.724
  recA Neisseria gonorrhoeae MS11

74.772

96.765

0.724
  recA Neisseria gonorrhoeae MS11

74.772

96.765

0.724
  recA Neisseria gonorrhoeae strain FA1090

74.772

96.765

0.724
  recA Glaesserella parasuis strain SC1401

71.513

99.118

0.709
  recA Acinetobacter baylyi ADP1

73.457

95.294

0.7
  recA Acinetobacter baumannii D1279779

73.148

95.294

0.697
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.93

100

0.641
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

96.471

0.638
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

95.882

0.632
  recA Latilactobacillus sakei subsp. sakei 23K

65.138

96.176

0.626
  recA Helicobacter pylori strain NCTC11637

62.611

99.118

0.621
  recA Helicobacter pylori 26695

62.315

99.118

0.618
  recA Lactococcus lactis subsp. cremoris KW2

63.636

97.059

0.618
  recA Streptococcus pneumoniae D39

62.727

97.059

0.609
  recA Streptococcus pneumoniae Rx1

62.727

97.059

0.609
  recA Streptococcus pneumoniae R6

62.727

97.059

0.609
  recA Streptococcus pneumoniae TIGR4

62.727

97.059

0.609
  recA Streptococcus mitis NCTC 12261

60.947

99.412

0.606
  recA Streptococcus mutans UA159

60.767

99.706

0.606
  recA Streptococcus pyogenes NZ131

62.424

97.059

0.606
  recA Streptococcus mitis SK321

60.651

99.412

0.603
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

95.882

0.591

Multiple sequence alignment