Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O1Q80_RS01585 Genome accession   NZ_CP169368
Coordinates   332297..333421 (+) Length   374 a.a.
NCBI ID   WP_386695261.1    Uniprot ID   -
Organism   Lonepinella sp. MS14435     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327297..338421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q80_RS01560 (O1Q80_00312) dprA 327980..329086 (+) 1107 WP_386695251.1 DNA-processing protein DprA Machinery gene
  O1Q80_RS01565 (O1Q80_00313) pdxH 329319..329951 (-) 633 WP_386695253.1 pyridoxamine 5'-phosphate oxidase -
  O1Q80_RS01570 (O1Q80_00314) - 329967..330551 (-) 585 WP_386695255.1 aminotransferase class IV family protein -
  O1Q80_RS01575 (O1Q80_00315) - 330548..331531 (-) 984 WP_386695257.1 aminodeoxychorismate synthase component I -
  O1Q80_RS01580 (O1Q80_00316) - 331586..332227 (+) 642 WP_386695259.1 anthranilate synthase component II -
  O1Q80_RS01585 (O1Q80_00317) recA 332297..333421 (+) 1125 WP_386695261.1 recombinase RecA Machinery gene
  O1Q80_RS01590 (O1Q80_00318) recX 333494..333952 (+) 459 WP_386695263.1 recombination regulator RecX -
  O1Q80_RS01600 (O1Q80_00320) - 334208..334531 (+) 324 WP_386695265.1 helix-turn-helix domain-containing protein -
  O1Q80_RS01605 (O1Q80_00321) - 334531..335808 (+) 1278 WP_386695267.1 type II toxin-antitoxin system HipA family toxin -
  O1Q80_RS01610 (O1Q80_00322) selA 335852..337234 (+) 1383 WP_386695269.1 L-seryl-tRNA(Sec) selenium transferase -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40069.71 Da        Isoelectric Point: 4.7692

>NTDB_id=1051017 O1Q80_RS01585 WP_386695261.1 332297..333421(+) (recA) [Lonepinella sp. MS14435]
MAKDNKAKAKPTAKENNSQEDKAKALAAALGQIEKQFGKGAIMKLGDSQTLDVESISTGSIGLDVALGIGGLPMGRIVEI
FGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELFISQPDNGEQALEICDALVRSGAIDVIIVD
SVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLD
IRRIGAVKEGDEIIGNDTRVKVVKNKLAAPFRQAEFQILYGAGISKNGELIELGVKQKLVNKSGAWYAYNCEKIGQGKAN
AIKWLEDNPEAAAELEDKIKTALLENPEQALLPSDDNDKDQSDEINDEVNDLDF

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1051017 O1Q80_RS01585 WP_386695261.1 332297..333421(+) (recA) [Lonepinella sp. MS14435]
ATGGCTAAAGATAACAAAGCGAAAGCAAAACCAACCGCAAAAGAAAATAACTCACAAGAAGACAAAGCAAAAGCACTAGC
AGCCGCTCTCGGTCAAATTGAAAAACAATTCGGCAAAGGGGCGATTATGAAGTTAGGCGATTCACAAACCCTTGATGTAG
AATCTATTTCAACAGGTTCAATCGGTTTAGATGTAGCATTAGGTATTGGTGGTTTACCAATGGGACGTATTGTTGAAATC
TTTGGTCCAGAATCATCAGGTAAAACTACATTAACCCTTTCCGTGATCGCACAAGCACAAAAAGCAGGCAAAGTCTGTGC
CTTTATTGATGCGGAACATGCCTTAGACCCAATTTATGCAGCAAAATTAGGGGTTGATGTCAAAGAACTGTTTATTTCTC
AACCTGATAATGGTGAACAGGCGCTAGAAATCTGTGATGCCTTAGTACGTTCAGGGGCGATTGATGTGATTATTGTGGAC
TCTGTCGCTGCATTAACCCCAAAAGCTGAAATCGAAGGGGATATGGGCGATTCTCACGTTGGTTTGCAAGCCCGTTTAAT
GTCACAAGCGTTGCGTAAATTAACCGGTCAGATTAAAAACTCTAATTGTTTAGTAGTGTTTATCAACCAAATTCGAATGA
AAATCGGTGTGATGTTTGGCAATCCAGAAACCACCACTGGCGGTAACGCACTAAAATTCTATTCATCTGTGCGTTTAGAT
ATTCGCCGTATCGGTGCAGTGAAAGAGGGTGATGAGATTATTGGTAATGATACTCGGGTCAAAGTAGTGAAAAATAAACT
TGCAGCTCCGTTCCGTCAAGCCGAATTCCAAATTCTTTATGGTGCGGGTATCTCGAAAAATGGTGAGCTAATTGAACTTG
GTGTTAAACAAAAATTAGTCAACAAATCTGGGGCTTGGTATGCTTACAATTGTGAAAAAATCGGGCAAGGTAAAGCGAAT
GCGATCAAATGGTTAGAAGACAATCCTGAAGCAGCCGCAGAATTAGAAGATAAAATTAAGACAGCTTTATTAGAAAATCC
TGAACAAGCCTTGTTGCCATCGGATGATAATGATAAAGATCAAAGTGATGAAATCAATGACGAAGTAAATGATTTAGATT
TCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

70.541

98.93

0.698
  recA Pseudomonas stutzeri DSM 10701

77.231

86.898

0.671
  recA Vibrio cholerae strain A1552

74.775

89.037

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.775

89.037

0.666
  recA Neisseria gonorrhoeae MS11

74.845

86.096

0.644
  recA Neisseria gonorrhoeae MS11

74.845

86.096

0.644
  recA Neisseria gonorrhoeae strain FA1090

74.845

86.096

0.644
  recA Acinetobacter baylyi ADP1

69.501

91.176

0.634
  recA Acinetobacter baumannii D1279779

71.692

86.898

0.623
  recA Ralstonia pseudosolanacearum GMI1000

68.902

87.701

0.604
  recA Helicobacter pylori 26695

62.315

90.107

0.562
  recA Helicobacter pylori strain NCTC11637

62.315

90.107

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

86.898

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.493

89.572

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.382

92.513

0.54
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

85.561

0.535
  recA Streptococcus mitis SK321

55.618

95.187

0.529
  recA Streptococcus pneumoniae TIGR4

54.622

95.455

0.521
  recA Streptococcus pneumoniae Rx1

54.622

95.455

0.521
  recA Streptococcus pneumoniae D39

54.622

95.455

0.521
  recA Streptococcus pneumoniae R6

54.622

95.455

0.521
  recA Streptococcus mutans UA159

55.908

92.781

0.519
  recA Streptococcus mitis NCTC 12261

54.802

94.652

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

56.305

91.176

0.513
  recA Lactococcus lactis subsp. cremoris KW2

53.09

95.187

0.505
  recA Streptococcus pyogenes NZ131

57.055

87.166

0.497

Multiple sequence alignment