Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O1Q82_RS01855 Genome accession   NZ_CP169367
Coordinates   382045..383169 (-) Length   374 a.a.
NCBI ID   WP_386688816.1    Uniprot ID   -
Organism   Lonepinella sp. MS14437     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 377045..388169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q82_RS01830 (O1Q82_00368) selA 378233..379615 (-) 1383 WP_386688808.1 L-seryl-tRNA(Sec) selenium transferase -
  O1Q82_RS01835 (O1Q82_00369) - 379659..380936 (-) 1278 WP_386688810.1 type II toxin-antitoxin system HipA family toxin -
  O1Q82_RS01840 (O1Q82_00370) - 380936..381259 (-) 324 WP_386688812.1 helix-turn-helix domain-containing protein -
  O1Q82_RS01850 (O1Q82_00372) recX 381514..381972 (-) 459 WP_386688814.1 recombination regulator RecX -
  O1Q82_RS01855 (O1Q82_00373) recA 382045..383169 (-) 1125 WP_386688816.1 recombinase RecA Machinery gene
  O1Q82_RS01860 (O1Q82_00374) - 383239..383880 (-) 642 WP_386688818.1 anthranilate synthase component II -
  O1Q82_RS01865 (O1Q82_00375) - 383935..384918 (+) 984 WP_386688820.1 aminodeoxychorismate synthase component I -
  O1Q82_RS01870 (O1Q82_00376) - 384915..385499 (+) 585 WP_386688822.1 aminotransferase class IV family protein -
  O1Q82_RS01875 (O1Q82_00377) pdxH 385515..386147 (+) 633 WP_386688824.1 pyridoxamine 5'-phosphate oxidase -
  O1Q82_RS01880 (O1Q82_00378) dprA 386380..387486 (-) 1107 WP_386688826.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40006.63 Da        Isoelectric Point: 4.8287

>NTDB_id=1050991 O1Q82_RS01855 WP_386688816.1 382045..383169(-) (recA) [Lonepinella sp. MS14437]
MAKDNKAKAKPTAKENNSQEDKAKALAAALGQIEKQFGKGAIMKLGDSQTLDVESISTGSIGLDVALGIGGLPMGRIVEI
FGPESSGKTTLTLSVIAQAQKAGKVCAFIDAEHALDPIYAAKLGVDVKELFISQPDNGEQALEICDALVRSGAIDVIIVD
SVAALTPKAEIEGDMGDSHVGLQARLMSQALRKLTGQIKNSNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLD
IRRIGAVKEGDEIIGNDTRVKVVKNKLAAPFRQAEFQILYGAGISKNGELIELGVKQKLVNKSGAWYAYNGEKIGQGKAN
AIKWLEDNPEAAAELEDKIKTALLENPEQALLPADDNDKDQSDEINDEVNDLNF

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1050991 O1Q82_RS01855 WP_386688816.1 382045..383169(-) (recA) [Lonepinella sp. MS14437]
ATGGCTAAAGATAACAAAGCGAAAGCAAAACCAACCGCAAAAGAAAATAACTCACAAGAAGACAAAGCAAAAGCACTGGC
AGCCGCTCTTGGTCAAATTGAAAAACAATTTGGCAAAGGGGCGATTATGAAGTTAGGCGATTCACAAACCCTTGATGTAG
AATCTATTTCAACAGGTTCAATCGGTTTAGATGTAGCATTAGGTATTGGTGGTTTGCCAATGGGACGTATCGTTGAAATC
TTTGGTCCAGAATCATCAGGTAAAACTACATTAACCCTTTCCGTGATCGCACAAGCACAAAAAGCAGGCAAAGTCTGTGC
CTTTATTGATGCGGAACATGCCTTAGACCCAATTTATGCAGCAAAATTAGGGGTTGATGTCAAAGAACTGTTTATTTCTC
AACCTGATAATGGTGAACAAGCCCTAGAAATCTGTGATGCCTTAGTACGTTCAGGGGCGATTGATGTGATTATTGTGGAC
TCTGTCGCTGCATTAACCCCAAAAGCTGAAATCGAAGGGGATATGGGCGATTCTCACGTTGGTTTACAAGCCCGTTTAAT
GTCACAAGCGTTGCGTAAATTAACTGGTCAGATTAAAAACTCTAACTGTTTAGTAGTATTTATCAACCAAATTCGAATGA
AAATCGGTGTGATGTTTGGCAATCCTGAAACCACCACTGGCGGTAACGCCCTAAAATTCTATTCATCTGTGCGTTTAGAT
ATTCGCCGTATCGGTGCAGTGAAAGAAGGTGATGAGATTATTGGTAATGATACTCGGGTCAAAGTAGTGAAAAATAAACT
TGCAGCTCCGTTCCGTCAAGCCGAATTCCAAATTCTTTATGGTGCGGGTATCTCGAAAAATGGTGAGCTAATTGAACTTG
GTGTTAAACAAAAATTAGTCAACAAATCTGGGGCTTGGTATGCTTACAATGGCGAGAAGATCGGGCAAGGTAAAGCGAAT
GCGATCAAATGGTTAGAAGACAATCCTGAAGCAGCCGCAGAATTAGAAGATAAAATTAAGACTGCTTTATTAGAAAATCC
AGAACAAGCCTTGTTGCCAGCTGATGATAACGATAAAGATCAAAGTGATGAAATCAATGACGAAGTAAATGATTTAAATT
TCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

70.541

98.93

0.698
  recA Pseudomonas stutzeri DSM 10701

77.538

86.898

0.674
  recA Vibrio cholerae strain A1552

74.702

89.84

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.702

89.84

0.671
  recA Neisseria gonorrhoeae MS11

75.155

86.096

0.647
  recA Neisseria gonorrhoeae MS11

75.155

86.096

0.647
  recA Neisseria gonorrhoeae strain FA1090

75.155

86.096

0.647
  recA Acinetobacter baylyi ADP1

69.795

91.176

0.636
  recA Acinetobacter baumannii D1279779

72

86.898

0.626
  recA Ralstonia pseudosolanacearum GMI1000

69.512

87.701

0.61
  recA Helicobacter pylori 26695

62.687

89.572

0.562
  recA Helicobacter pylori strain NCTC11637

62.687

89.572

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

86.898

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.493

89.572

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.382

92.513

0.54
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

85.561

0.535
  recA Streptococcus mutans UA159

55.125

96.524

0.532
  recA Streptococcus mitis SK321

55.337

95.187

0.527
  recA Streptococcus pneumoniae Rx1

54.622

95.455

0.521
  recA Streptococcus pneumoniae TIGR4

54.622

95.455

0.521
  recA Streptococcus pneumoniae R6

54.622

95.455

0.521
  recA Streptococcus pneumoniae D39

54.622

95.455

0.521
  recA Streptococcus mitis NCTC 12261

54.52

94.652

0.516
  recA Latilactobacillus sakei subsp. sakei 23K

56.305

91.176

0.513
  recA Lactococcus lactis subsp. cremoris KW2

53.09

95.187

0.505
  recA Streptococcus pyogenes NZ131

57.362

87.166

0.5

Multiple sequence alignment