Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACEPA4_RS07665 Genome accession   NZ_CP169216
Coordinates   1633438..1634475 (+) Length   345 a.a.
NCBI ID   WP_005416046.1    Uniprot ID   A0AAP7M5V8
Organism   Stenotrophomonas sp. P2112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1628438..1639475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPA4_RS07640 (ACEPA4_07640) hfq 1628451..1628726 (+) 276 WP_004152891.1 RNA chaperone Hfq -
  ACEPA4_RS07645 (ACEPA4_07645) hflX 1628741..1630051 (+) 1311 WP_005416042.1 ribosome rescue GTPase HflX -
  ACEPA4_RS07650 (ACEPA4_07650) - 1630177..1630671 (+) 495 WP_005416043.1 CinA family protein -
  ACEPA4_RS07655 (ACEPA4_07655) ubiB 1630706..1632388 (+) 1683 WP_053499129.1 2-polyprenylphenol 6-hydroxylase -
  ACEPA4_RS07660 (ACEPA4_07660) lexA 1632598..1633233 (+) 636 WP_005412936.1 transcriptional repressor LexA -
  ACEPA4_RS07665 (ACEPA4_07665) recA 1633438..1634475 (+) 1038 WP_005416046.1 recombinase RecA Machinery gene
  ACEPA4_RS07670 (ACEPA4_07670) recX 1634586..1635077 (+) 492 WP_005416047.1 recombination regulator RecX -
  ACEPA4_RS07675 (ACEPA4_07675) alaS 1635187..1637835 (+) 2649 WP_164093501.1 alanine--tRNA ligase -
  ACEPA4_RS07680 (ACEPA4_07680) csrA 1637983..1638186 (+) 204 WP_004152909.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37136.61 Da        Isoelectric Point: 4.7662

>NTDB_id=1049831 ACEPA4_RS07665 WP_005416046.1 1633438..1634475(+) (recA) [Stenotrophomonas sp. P2112]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRVVEPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKMGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGEERIGQGKDNARGYLRDNPTVAAKL
EAELREKFQPAEAAREEGDDEGDDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1049831 ACEPA4_RS07665 WP_005416046.1 1633438..1634475(+) (recA) [Stenotrophomonas sp. P2112]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCTGCTCTGGGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGGTCGAGCCCGTCGAAGCCATCCCGACCGGTTCGCTGATGCTCGACATCGCACTGGGCATTGGCG
GTCTGCCGAAGGGCCGTGTCGTTGAGATCTACGGGCCGGAATCCTCGGGCAAGACCACCCTGACTCTGCAGGCCATCGCC
GAATGCCAGAAGATGGGCGGTACCGCGGCCTTCATCGATGCCGAGCACGCGCTTGACCCGATCTACGCCGCGAAGCTGGG
CGTGAACGTGGACGACCTGCTGTTGTCGCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTCCGTT
CGGGCTCGGTTGACATCCTGGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAAATGGGTGAC
CAGCTGCCGGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGTTCGAACACCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGTATCGGTGCGATCAAGAAGGGCGATGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
AGGCATCAGCCGCGAGGGCGAACTGATCGACATGGGCGTGGATGCCAAGCTGGTCGAGAAGGCCGGCGCCTGGTACAGCT
ACGGTGAAGAGCGCATTGGCCAGGGCAAGGACAATGCCCGCGGCTACCTGCGCGACAACCCGACCGTCGCCGCCAAGCTC
GAGGCCGAGCTGCGTGAGAAATTCCAGCCGGCCGAAGCGGCCCGCGAGGAAGGCGACGACGAAGGCGACGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.435

100

0.704
  recA Pseudomonas stutzeri DSM 10701

73.476

95.072

0.699
  recA Ralstonia pseudosolanacearum GMI1000

76.677

90.725

0.696
  recA Acinetobacter baumannii D1279779

72.561

95.072

0.69
  recA Vibrio cholerae strain A1552

72.393

94.493

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.393

94.493

0.684
  recA Neisseria gonorrhoeae MS11

65.143

100

0.661
  recA Neisseria gonorrhoeae MS11

65.143

100

0.661
  recA Neisseria gonorrhoeae strain FA1090

65.143

100

0.661
  recA Glaesserella parasuis strain SC1401

65.407

99.71

0.652
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.072

96.812

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.628

99.71

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

61.493

97.101

0.597
  recA Streptococcus mitis SK321

59.767

99.42

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

94.203

0.594
  recA Helicobacter pylori strain NCTC11637

61.747

96.232

0.594
  recA Helicobacter pylori 26695

61.145

96.232

0.588
  recA Streptococcus mitis NCTC 12261

60.976

95.072

0.58
  recA Streptococcus pneumoniae Rx1

60.976

95.072

0.58
  recA Streptococcus pneumoniae D39

60.976

95.072

0.58
  recA Streptococcus pneumoniae R6

60.976

95.072

0.58
  recA Streptococcus pneumoniae TIGR4

60.976

95.072

0.58
  recA Streptococcus mutans UA159

60.606

95.652

0.58
  recA Streptococcus pyogenes NZ131

60.606

95.652

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

95.652

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.077

94.203

0.557

Multiple sequence alignment