Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB2Q65_RS07255 Genome accession   NZ_CP168902
Coordinates   1442774..1443820 (+) Length   348 a.a.
NCBI ID   WP_047584092.1    Uniprot ID   A0AAD2MF84
Organism   Listeria monocytogenes strain N22-1077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1437774..1448820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2Q65_RS07235 (AB2Q65_07235) ymfI 1438809..1439540 (+) 732 WP_003727459.1 elongation factor P 5-aminopentanone reductase -
  AB2Q65_RS07240 (AB2Q65_07240) - 1439591..1440520 (+) 930 WP_003727458.1 RodZ family helix-turn-helix domain-containing protein -
  AB2Q65_RS07245 (AB2Q65_07245) pgsA 1440611..1441189 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB2Q65_RS07250 (AB2Q65_07250) cinA 1441257..1442501 (+) 1245 WP_003725960.1 competence/damage-inducible protein A Machinery gene
  AB2Q65_RS07255 (AB2Q65_07255) recA 1442774..1443820 (+) 1047 WP_047584092.1 recombinase RecA Machinery gene
  AB2Q65_RS07260 (AB2Q65_07260) rny 1444121..1445683 (+) 1563 WP_003721904.1 ribonuclease Y -
  AB2Q65_RS07265 (AB2Q65_07265) - 1445798..1446295 (+) 498 WP_009918755.1 GNAT family N-acetyltransferase -
  AB2Q65_RS07270 (AB2Q65_07270) - 1446301..1447104 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  AB2Q65_RS07275 (AB2Q65_07275) - 1447121..1447483 (+) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37921.93 Da        Isoelectric Point: 4.7487

>NTDB_id=1048293 AB2Q65_RS07255 WP_047584092.1 1442774..1443820(+) (recA) [Listeria monocytogenes strain N22-1077]
MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDAMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR
VREEYEIDGSNKEPLDEGEETLSLLDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1048293 AB2Q65_RS07255 WP_047584092.1 1442774..1443820(+) (recA) [Listeria monocytogenes strain N22-1077]
GTGAATGATCGTCAAGCGGCATTAGACCAAGCTTTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATTATGAAATT
AGGGGAACATTCAGACCAAAATATATCTACTATTTCTAGTGGCTCATTAGCATTAGATATTGCTTTAGGAGTCGGCGGAT
ATCCACGTGGACGTATTATTGAAGTATACGGGCCAGAGAGTTCCGGTAAAACAACTGTTGCACTTCATGCTATTGCGGAA
GTACAAGCACAAGGCGGAACAGCTGCATTTATCGATGCAGAACACGCACTAGATCCAGCTTATGCTAAAAACCTAGGTGT
AAATATTGATGAATTATTACTATCTCAACCTGATACAGGAGAGCAAGCATTAGAAATTGCAGAAGCATTAGTTAGAAGTG
GTGCTGTAGATATGCTAGTAATTGACTCCGTTGCAGCACTTGTACCACGTGCTGAAATCGAAGGGGAGATGGGTGATGCA
CACGTTGGGCTACAAGCACGTTTAATGTCCCAAGCATTGCGTAAACTTTCCGGTGTTATTAATAAATCAAAAACCATTGC
TATTTTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTTGGTAACCCAGAGATTACACCTGGTGGTCGTGCGCTTA
AATTCTATTCGACTGTACGTTTAGAAGTAAGACGTGCAGAACAACTTAAGCAAGGTACAGATGCAATGGGTAACAAAACA
AAAATTAAAGTTGTAAAAAACAAAGTAGCTCCTCCATTCCGTATTGCTGAAGTGGATATCATGTACGGTGAAGGTATTTC
ACGTGAAGGCGAGCTTGTTGATATGGCCGCTGAAGTGGATGTAATCAATAAGAGTGGTTCATGGTATTCTTACAAAGAAG
AACGTATCGGCCAAGGTCGTGAAAACGCAAAACAATATCTAAAAGAACATACAGATATTCGTGATGAGATTTCAAAACGT
GTTCGTGAAGAGTACGAAATCGACGGAAGCAATAAAGAACCTTTAGATGAAGGCGAAGAAACATTAAGTTTACTAGATGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.841

94.253

0.79
  recA Latilactobacillus sakei subsp. sakei 23K

77.011

100

0.77
  recA Streptococcus pneumoniae TIGR4

70.783

95.402

0.675
  recA Streptococcus pneumoniae Rx1

70.783

95.402

0.675
  recA Streptococcus pneumoniae D39

70.783

95.402

0.675
  recA Streptococcus pneumoniae R6

70.783

95.402

0.675
  recA Streptococcus mitis NCTC 12261

69.88

95.402

0.667
  recA Streptococcus mitis SK321

69.277

95.402

0.661
  recA Streptococcus pyogenes NZ131

69.817

94.253

0.658
  recA Streptococcus mutans UA159

68.902

94.253

0.649
  recA Lactococcus lactis subsp. cremoris KW2

68.502

93.966

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

98.276

0.606
  recA Vibrio cholerae strain A1552

61.159

99.138

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.159

99.138

0.606
  recA Neisseria gonorrhoeae strain FA1090

64.286

92.529

0.595
  recA Neisseria gonorrhoeae MS11

64.286

92.529

0.595
  recA Neisseria gonorrhoeae MS11

64.286

92.529

0.595
  recA Helicobacter pylori 26695

59.71

99.138

0.592
  recA Helicobacter pylori strain NCTC11637

59.71

99.138

0.592
  recA Acinetobacter baylyi ADP1

59.249

99.425

0.589
  recA Acinetobacter baumannii D1279779

59.767

98.563

0.589
  recA Ralstonia pseudosolanacearum GMI1000

65.696

88.793

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

91.954

0.578
  recA Pseudomonas stutzeri DSM 10701

61.094

94.54

0.578
  recA Glaesserella parasuis strain SC1401

63.009

91.667

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.61

95.115

0.557

Multiple sequence alignment