Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACERCD_RS07965 Genome accession   NZ_CP168756
Coordinates   1642984..1644030 (-) Length   348 a.a.
NCBI ID   WP_021338755.1    Uniprot ID   A0AAP7IDQ3
Organism   Staphylococcus equorum strain SN42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1637984..1649030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACERCD_RS07950 (ACERCD_07950) - 1639707..1640495 (-) 789 WP_002507824.1 TIGR00282 family metallophosphoesterase -
  ACERCD_RS07955 (ACERCD_07955) - 1640660..1640878 (+) 219 WP_002507825.1 hypothetical protein -
  ACERCD_RS07960 (ACERCD_07960) rny 1641099..1642658 (-) 1560 WP_021338756.1 ribonuclease Y -
  ACERCD_RS07965 (ACERCD_07965) recA 1642984..1644030 (-) 1047 WP_021338755.1 recombinase RecA Machinery gene
  ACERCD_RS07970 (ACERCD_07970) - 1644204..1645346 (-) 1143 WP_021338754.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  ACERCD_RS07975 (ACERCD_07975) pgsA 1645654..1646232 (-) 579 WP_002507829.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACERCD_RS07980 (ACERCD_07980) - 1646285..1646677 (-) 393 WP_002507830.1 RodZ family helix-turn-helix domain-containing protein -
  ACERCD_RS07985 (ACERCD_07985) - 1646711..1647541 (-) 831 WP_373442514.1 YmfK family protein -
  ACERCD_RS07990 (ACERCD_07990) ymfI 1647705..1648409 (-) 705 WP_021338752.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37788.91 Da        Isoelectric Point: 5.2212

>NTDB_id=1045571 ACERCD_RS07965 WP_021338755.1 1642984..1644030(-) (recA) [Staphylococcus equorum strain SN42]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKAQRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSKTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKLYLKENPEIKEDINR
RLREALGIIDGDVKEDESEKQTTLLEDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1045571 ACERCD_RS07965 WP_021338755.1 1642984..1644030(-) (recA) [Staphylococcus equorum strain SN42]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGCGATAATAAAGCCCAAAGAGTGTCTAGCGTTTCAAGTGGTTCAGTTACTTTGGATAATGCGTTAGGTGTAGGTG
GCTACCCTAAAGGAAGAATTATAGAAATATATGGGCCAGAAAGTTCTGGTAAAACTACAGTGGCATTACATGCTATTGCA
GAAGTACAAAAAAATGGTGGGATTGCGGCGTTTATTGATGCTGAACATGCGTTAGATCCTGTTTATGCAGAAGCTTTAGG
TGTAGATATTCAAAATCTATATTTATCTCAACCTGACCATGGGGAACAAGGATTGGAAATTGCCGAAGCATTCGTTAGAA
GTGGTGCTGTTGACATCGTAGTTGTTGACTCCGTTGCTGCGTTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCGCGTTTAATGTCACAAGCATTGCGTAAACTTTCAGGCGCTATTTCTAAATCAAAAACAAC
AGCAGTATTTATTAACCAAATTCGCGAAAAAGTAGGCGTGATGTTCGGTAATCCTGAAGTAACACCGGGTGGACGTGCAT
TGAAATTCTATAGTTCTGTACGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACGAAAATTAAAGTTGTTAAAAATAAAGTAGCACCGCCATTCAGAGTTGCAGAAGTGGATATGATGTATGGTAAAGGTAT
CTCTAAAGAAGGAGAACTTATTGACTTAGGTGTTGAAAATGAAATTGTAGATAAATCAGGTGCTTGGTATTCATACAATG
GAGATCGTATGGGACAAGGTAAAGAAAATGTTAAATTATATCTGAAAGAAAACCCTGAAATCAAAGAAGATATTAATCGT
AGATTGCGTGAAGCTCTAGGCATTATCGATGGTGATGTTAAAGAAGACGAAAGTGAAAAACAAACTACGCTTCTTGAAGA
TGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.678

0.718
  recA Latilactobacillus sakei subsp. sakei 23K

67.714

100

0.681
  recA Streptococcus pneumoniae R6

64.47

100

0.647
  recA Streptococcus pneumoniae Rx1

64.47

100

0.647
  recA Streptococcus pneumoniae D39

64.47

100

0.647
  recA Streptococcus pneumoniae TIGR4

64.47

100

0.647
  recA Streptococcus mutans UA159

65.217

99.138

0.647
  recA Streptococcus mitis NCTC 12261

65.766

95.69

0.629
  recA Acinetobacter baylyi ADP1

62.931

100

0.629
  recA Streptococcus pyogenes NZ131

66.565

94.54

0.629
  recA Acinetobacter baumannii D1279779

62.644

100

0.626
  recA Streptococcus mitis SK321

65.465

95.69

0.626
  recA Lactococcus lactis subsp. cremoris KW2

64.955

95.115

0.618
  recA Neisseria gonorrhoeae MS11

64.438

94.54

0.609
  recA Neisseria gonorrhoeae strain FA1090

64.438

94.54

0.609
  recA Neisseria gonorrhoeae MS11

64.438

94.54

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

94.54

0.606
  recA Helicobacter pylori 26695

63.11

94.253

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.497

93.678

0.595
  recA Vibrio cholerae strain A1552

63.497

93.678

0.595
  recA Helicobacter pylori strain NCTC11637

62.805

94.253

0.592
  recA Ralstonia pseudosolanacearum GMI1000

63.898

89.943

0.575
  recA Pseudomonas stutzeri DSM 10701

59.88

95.977

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.115

0.572
  recA Glaesserella parasuis strain SC1401

60.87

92.529

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

93.103

0.557

Multiple sequence alignment