Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACEN40_RS02090 Genome accession   NZ_CP168724
Coordinates   394351..395385 (+) Length   344 a.a.
NCBI ID   WP_158334603.1    Uniprot ID   -
Organism   Campylobacter bilis strain 64     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 389351..400385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN40_RS02075 (ACEN40_02075) - 392327..393103 (-) 777 WP_158334600.1 UDP-N-acetylmuramate dehydrogenase -
  ACEN40_RS02080 (ACEN40_02080) fliQ 393100..393369 (-) 270 WP_158334601.1 flagellar biosynthesis protein FliQ -
  ACEN40_RS02085 (ACEN40_02085) - 393381..394241 (-) 861 WP_158334602.1 menaquinone biosynthesis family protein -
  ACEN40_RS02090 (ACEN40_02090) recA 394351..395385 (+) 1035 WP_158334603.1 recombinase RecA Machinery gene
  ACEN40_RS02095 (ACEN40_02095) eno 395385..396629 (+) 1245 WP_158334604.1 phosphopyruvate hydratase -
  ACEN40_RS02100 (ACEN40_02100) - 396695..396898 (+) 204 WP_158334605.1 hypothetical protein -
  ACEN40_RS02105 (ACEN40_02105) - 396888..397550 (+) 663 WP_158334606.1 AMIN domain-containing protein -
  ACEN40_RS02135 (ACEN40_02135) - 398980..399423 (+) 444 WP_158334607.1 DUF411 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37259.54 Da        Isoelectric Point: 5.1881

>NTDB_id=1045281 ACEN40_RS02090 WP_158334603.1 394351..395385(+) (recA) [Campylobacter bilis strain 64]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEIEQIDSIATGSFGLDLALGIGGIPKGRIVEIYGPESSGKTTLTLHIIA
QCQKAGGVCAFVDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAIDLIIVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVVFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEESIGN
RVKVKVVKNKVAPPFKQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYQDKKLGHGRENSKAFLKENPELAEEIA
KAIENSIGIQSMISVGEDDERGEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1045281 ACEN40_RS02090 WP_158334603.1 394351..395385(+) (recA) [Campylobacter bilis strain 64]
ATGGATGATAATAAAAGAAAGTCTTTAGATGCTGCTTTGAAAAGTTTGGATAAAACTTTTGGAAAAGGAACGATTTTAAG
ATTGGGCGATAAAGAAATTGAGCAAATTGATAGCATAGCCACGGGTTCTTTTGGACTGGATTTAGCGCTTGGTATAGGAG
GTATTCCTAAAGGAAGGATAGTAGAGATTTATGGGCCTGAGAGTTCAGGTAAGACTACTTTGACCTTGCATATTATAGCA
CAGTGCCAAAAGGCTGGGGGAGTTTGTGCTTTTGTGGATGCTGAACATGCGCTTGATGTAAAATACGCTAAAAATTTGGG
GGTTAATACCGATGATCTTTATGTTTCACAGCCTGATTTTGGTGAACAGGCTTTAGAGATAGTTGAAACCATAGCAAGAA
GCGGTGCTATTGATCTTATCATCGTTGATAGTGTCGCAGCGCTTACGCCTAAGGCTGAGATTGAAGGAGATATGGGGGAT
CAGCATGTGGGGCTTCAAGCAAGGCTGATGTCTCAGGCTTTAAGAAAGCTTACAGGCATAGTGCATAAGATGAATACTAC
TGTTGTTTTTATCAATCAAATCCGTATGAAAATCGGAGCTATGGGCTATGGTACGCCTGAAACCACCACAGGAGGGAATG
CATTGAAATTCTATGCTTCGGTGCGTTTGGATGTGAGAAAGGTGGCGACTTTAAAGCAAAATGAAGAGTCTATAGGCAAT
CGCGTTAAAGTAAAAGTAGTTAAAAACAAGGTTGCGCCACCTTTTAAACAGGCTGAATTTGATGTGATGTTTGGGGAGGG
CTTGAGTCGTGAAGGCGAGCTTATAGACTATGGTGTGAAGCTTGATATAGTGGATAAAAGTGGAGCGTGGTTTTCCTATC
AAGATAAGAAATTAGGTCATGGTAGAGAAAATTCTAAGGCTTTTTTGAAAGAAAATCCAGAATTAGCTGAAGAAATCGCA
AAGGCCATTGAAAATTCTATAGGCATACAAAGCATGATTAGTGTGGGTGAAGATGATGAAAGAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.023

100

0.93
  recA Helicobacter pylori 26695

77.134

95.349

0.735
  recA Helicobacter pylori strain NCTC11637

76.829

95.349

0.733
  recA Neisseria gonorrhoeae MS11

65.103

99.128

0.645
  recA Neisseria gonorrhoeae MS11

65.103

99.128

0.645
  recA Neisseria gonorrhoeae strain FA1090

65.103

99.128

0.645
  recA Acinetobacter baylyi ADP1

61.919

100

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

96.512

0.61
  recA Pseudomonas stutzeri DSM 10701

63.444

96.221

0.61
  recA Glaesserella parasuis strain SC1401

64.615

94.477

0.61
  recA Acinetobacter baumannii D1279779

63.303

95.058

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.467

93.895

0.596
  recA Vibrio cholerae strain A1552

63.467

93.895

0.596
  recA Ralstonia pseudosolanacearum GMI1000

62.813

93.023

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

61.35

94.767

0.581
  recA Streptococcus pneumoniae D39

56.637

98.547

0.558
  recA Streptococcus pneumoniae Rx1

56.637

98.547

0.558
  recA Streptococcus pneumoniae R6

56.637

98.547

0.558
  recA Streptococcus pneumoniae TIGR4

56.637

98.547

0.558
  recA Streptococcus pyogenes NZ131

57.879

95.93

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

57.798

95.058

0.549
  recA Streptococcus mitis SK321

56.839

95.64

0.544
  recA Streptococcus mitis NCTC 12261

56.839

95.64

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.177

91.86

0.544
  recA Streptococcus mutans UA159

56.495

96.221

0.544
  recA Lactococcus lactis subsp. cremoris KW2

56.231

95.64

0.538

Multiple sequence alignment