Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACEPSR_RS00900 Genome accession   NZ_CP168714
Coordinates   164621..165727 (-) Length   368 a.a.
NCBI ID   WP_395320096.1    Uniprot ID   -
Organism   Fructilactobacillus frigidiflavus strain FUA3912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 159621..170727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSR_RS00870 - 159826..160191 (-) 366 WP_395320084.1 YisL family protein -
  ACEPSR_RS00875 - 160247..161137 (-) 891 WP_395320086.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  ACEPSR_RS00880 - 161251..161889 (+) 639 WP_395320088.1 TetR/AcrR family transcriptional regulator -
  ACEPSR_RS00885 - 161924..162352 (-) 429 WP_395320090.1 hypothetical protein -
  ACEPSR_RS00890 - 162362..163006 (-) 645 WP_395320092.1 energy-coupling factor transporter transmembrane component T family protein -
  ACEPSR_RS00895 - 163006..164403 (-) 1398 WP_395320094.1 ATP-binding cassette domain-containing protein -
  ACEPSR_RS00900 recA 164621..165727 (-) 1107 WP_395320096.1 recombinase RecA Machinery gene
  ACEPSR_RS00905 - 165930..166637 (+) 708 WP_395320470.1 AzlC family ABC transporter permease -
  ACEPSR_RS00910 - 166624..166950 (+) 327 WP_395320098.1 AzlD domain-containing protein -
  ACEPSR_RS00915 - 166988..167164 (-) 177 WP_395320099.1 hypothetical protein -
  ACEPSR_RS00920 - 167180..167704 (-) 525 WP_395320101.1 GNAT family N-acetyltransferase -
  ACEPSR_RS00925 - 167781..168959 (-) 1179 WP_395378757.1 thiolase family protein -
  ACEPSR_RS00930 - 169046..169591 (+) 546 WP_395320105.1 hypothetical protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39290.84 Da        Isoelectric Point: 5.3960

>NTDB_id=1045170 ACEPSR_RS00900 WP_395320096.1 164621..165727(-) (recA) [Fructilactobacillus frigidiflavus strain FUA3912]
MASSSKKNAQDARQAELDKALKQIKKEFGTGAIMRMGETPENSVSAISTGILSLDIALGVGGFPRGRVVEIFGAESSGKT
TIALQTVAETQKNGGTAAYIDAENAMDPEYAKALGVDIDNLLLSQPGTGEEGLRIADALIGSGAIDLVVVDSVAALVPKA
EIEGDIGDSHVGLQARLMSQALRKLTANINKTNTVVIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLRVSGTKQQKD
GQEVVGKETKIKVAKNKVAPPFKTVDTLMSFGKGIEPVADMVNLAVDKDIIDKSGSWYSYGEERLGQGLNKTVANLNEKP
ELVEELIHKVRVAYGIEKEDPAKTEKVEKPDKAVKDDAKPAEDAKLDI

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=1045170 ACEPSR_RS00900 WP_395320096.1 164621..165727(-) (recA) [Fructilactobacillus frigidiflavus strain FUA3912]
ATGGCCTCAAGTTCTAAGAAAAACGCGCAAGATGCTCGTCAAGCTGAGCTCGATAAAGCGTTAAAACAAATTAAAAAAGA
ATTTGGTACTGGTGCTATTATGCGAATGGGCGAAACTCCCGAAAACTCTGTTAGTGCAATCTCAACTGGAATTTTATCCT
TAGATATTGCCCTTGGAGTTGGTGGCTTTCCCCGTGGTCGGGTAGTAGAAATTTTCGGTGCTGAATCTTCTGGTAAAACT
ACCATTGCCTTACAAACCGTTGCAGAAACCCAAAAGAATGGTGGAACTGCAGCTTATATTGATGCTGAAAATGCGATGGA
TCCCGAATATGCCAAAGCATTAGGCGTTGATATTGATAACTTACTTCTTTCACAACCAGGAACTGGTGAAGAAGGACTTC
GGATTGCAGATGCCTTAATTGGTTCTGGTGCAATTGATTTAGTCGTGGTCGATTCTGTAGCTGCATTGGTTCCAAAAGCC
GAAATTGAAGGAGACATTGGTGATTCTCACGTTGGTTTACAAGCTCGTTTGATGTCCCAAGCCCTTCGTAAATTAACGGC
TAACATCAACAAGACTAATACCGTTGTAATTTTCATTAACCAACTTCGGGAAAAAGTTGGAGTGATGTTTGGTAACCCCG
AAACGACTCCTGGTGGTCGAGCATTGAAATTCTACTCTAGTGTTCGTCTCCGAGTTAGTGGAACGAAACAACAAAAAGAC
GGTCAAGAAGTCGTTGGGAAAGAAACCAAGATTAAAGTTGCCAAAAACAAGGTGGCCCCTCCTTTCAAGACCGTTGATAC
GCTCATGAGTTTCGGTAAAGGGATTGAACCAGTTGCTGACATGGTGAACTTAGCCGTTGATAAAGATATTATCGACAAGT
CTGGTTCATGGTACTCATACGGTGAAGAACGTCTAGGTCAAGGGCTTAACAAAACTGTGGCTAACTTGAACGAAAAACCT
GAGTTAGTAGAAGAACTAATCCACAAAGTTCGAGTAGCTTATGGCATTGAAAAAGAAGATCCTGCTAAAACTGAAAAAGT
AGAAAAACCTGACAAAGCAGTCAAAGATGACGCTAAGCCAGCTGAAGATGCAAAACTAGATATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

64.706

92.391

0.598
  recA Streptococcus mutans UA159

61.408

96.467

0.592
  recA Streptococcus pyogenes NZ131

61.96

94.293

0.584
  recA Streptococcus pneumoniae Rx1

60.969

95.38

0.582
  recA Streptococcus pneumoniae D39

60.969

95.38

0.582
  recA Streptococcus pneumoniae R6

60.969

95.38

0.582
  recA Streptococcus pneumoniae TIGR4

60.969

95.38

0.582
  recA Streptococcus mitis NCTC 12261

62.391

93.207

0.582
  recA Streptococcus mitis SK321

62.391

93.207

0.582
  recA Lactococcus lactis subsp. cremoris KW2

60.519

94.293

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

61.846

88.315

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.938

87.5

0.524
  recA Acinetobacter baylyi ADP1

55.977

93.207

0.522
  recA Neisseria gonorrhoeae MS11

60.759

85.87

0.522
  recA Neisseria gonorrhoeae MS11

60.759

85.87

0.522
  recA Neisseria gonorrhoeae strain FA1090

60.759

85.87

0.522
  recA Glaesserella parasuis strain SC1401

55.988

90.761

0.508
  recA Acinetobacter baumannii D1279779

59.048

85.598

0.505
  recA Ralstonia pseudosolanacearum GMI1000

59.105

85.054

0.503
  recA Vibrio cholerae strain A1552

57.68

86.685

0.5
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.68

86.685

0.5
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.006

91.576

0.495
  recA Pseudomonas stutzeri DSM 10701

56.508

85.598

0.484
  recA Helicobacter pylori strain NCTC11637

53.354

89.13

0.476
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.354

89.13

0.476
  recA Helicobacter pylori 26695

53.049

89.13

0.473

Multiple sequence alignment