Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ACEPSZ_RS08565 Genome accession   NZ_CP168707
Coordinates   1831032..1832168 (-) Length   378 a.a.
NCBI ID   WP_395390457.1    Uniprot ID   -
Organism   Levilactobacillus lettrarii strain FUA 3914     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1826032..1837168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSZ_RS08555 - 1827935..1828729 (-) 795 WP_125765742.1 TIGR00282 family metallophosphoesterase -
  ACEPSZ_RS08560 rny 1829170..1830729 (-) 1560 WP_395390456.1 ribonuclease Y -
  ACEPSZ_RS08565 recA 1831032..1832168 (-) 1137 WP_395390457.1 recombinase RecA Machinery gene
  ACEPSZ_RS08570 cinA 1832260..1833510 (-) 1251 WP_204121402.1 competence/damage-inducible protein A Machinery gene
  ACEPSZ_RS08575 pgsA 1834387..1834974 (-) 588 WP_203646108.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACEPSZ_RS08580 - 1835046..1835990 (-) 945 WP_204121404.1 helix-turn-helix domain-containing protein -

Sequence


Protein


Download         Length: 378 a.a.        Molecular weight: 40413.85 Da        Isoelectric Point: 6.3235

>NTDB_id=1045135 ACEPSZ_RS08565 WP_395390457.1 1831032..1832168(-) (recA) [Levilactobacillus lettrarii strain FUA 3914]
MADERQAALDKALKKIEKDFGKGSIMRLGDNSNLNIETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYATALGVNIDQLLLSQPDTGEQGLQIADALISSGAVDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNR
TRIKVVKNKVAPPFKRAEVDIMYGKGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKAYLADHPDMMAEVNQ
RVRAAYGVGEGDDADDGKKAAGKDSKPTDKKDAKADAPKDKSKPEQSELIPDKNKPGK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=1045135 ACEPSZ_RS08565 WP_395390457.1 1831032..1832168(-) (recA) [Levilactobacillus lettrarii strain FUA 3914]
ATGGCTGACGAACGACAAGCGGCGTTGGATAAAGCGCTGAAGAAAATTGAAAAAGATTTCGGTAAAGGTTCGATCATGCG
GCTAGGTGACAACAGTAACCTGAACATTGAAACCGTTCCATCTGGCTCGTTGGCCCTTGATGTGGCCTTGGGTGTTGGTG
GTTACCCACGTGGACGAATCGTTGAAATTTACGGTCCAGAATCATCAGGTAAAACGACCGTGGCCTTGCACGCCGTAGCG
GAAGTTCAAAAGCGGGGCGGGACTGCAGCGTATATTGATGCAGAAAACGCTCTGGATCCGGCTTACGCAACTGCTTTAGG
GGTTAACATCGACCAATTACTTTTGTCACAACCTGATACCGGTGAACAAGGTCTGCAAATTGCAGATGCCTTGATTTCCA
GTGGGGCCGTGGACATTGTGGTTGTCGATTCCGTTGCCGCTTTGGTTCCCCGTGCGGAAATCGAAGGGGAAATGGGTGAT
GCCCATGTGGGTCTGCAAGCCCGTCTGATGTCTCAAGCGTTGCGGAAATTATCCGGGACGATTAACAAGACGAAGACGAT
TGCACTCTTCATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGTAACCCTGAAGTTACGCCTGGTGGCCGTGCGT
TGAAGTTCTACGCCACGGTTCGGTTGGAAGTTCGCCGGGCTGAACAGATCAAAGACGGCACCGATGTTATCGGTAACCGG
ACGCGGATCAAGGTCGTTAAGAACAAGGTTGCGCCGCCATTCAAGCGAGCTGAAGTCGACATCATGTACGGTAAGGGGAT
TTCCCAAACCGGTGAATTGCTCGACATGGCCGTTGAAAAGGACATTGTTGATAAGAGTGGGTCCTGGTACTCTTACGGCG
AAGACCGAATTGGTCAAGGTCGTGAGAATGCTAAGGCATACTTGGCTGACCATCCAGATATGATGGCTGAAGTTAACCAA
CGTGTTCGGGCCGCCTATGGTGTTGGCGAAGGTGACGACGCCGATGACGGGAAGAAGGCTGCTGGTAAAGACAGTAAGCC
AACTGACAAGAAGGATGCCAAAGCCGATGCCCCTAAGGACAAAAGCAAGCCAGAACAAAGTGAATTAATTCCGGACAAGA
ACAAGCCTGGTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.585

86.772

0.751

  recA Bacillus subtilis subsp. subtilis str. 168

75.61

86.772

0.656

  recA Streptococcus pneumoniae D39

66.205

95.503

0.632

  recA Streptococcus pneumoniae Rx1

66.205

95.503

0.632

  recA Streptococcus pneumoniae R6

66.205

95.503

0.632

  recA Streptococcus pneumoniae TIGR4

66.205

95.503

0.632

  recA Streptococcus mutans UA159

66.205

95.503

0.632

  recA Streptococcus mitis SK321

70

89.947

0.63

  recA Streptococcus mitis NCTC 12261

69.706

89.947

0.627

  recA Streptococcus pyogenes NZ131

70.695

87.566

0.619

  recA Lactococcus lactis subsp. cremoris KW2

70.517

87.037

0.614

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.31

87.037

0.542

  recA Neisseria gonorrhoeae MS11

61.702

87.037

0.537

  recA Neisseria gonorrhoeae MS11

61.702

87.037

0.537

  recA Neisseria gonorrhoeae strain FA1090

61.702

87.037

0.537

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

86.508

0.534

  recA Vibrio cholerae strain A1552

61.92

85.45

0.529

  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.92

85.45

0.529

  recA Ralstonia pseudosolanacearum GMI1000

63.898

82.804

0.529

  recA Acinetobacter baylyi ADP1

60.991

85.45

0.521

  recA Pseudomonas stutzeri DSM 10701

60.185

85.714

0.516

  recA Acinetobacter baumannii D1279779

60.062

85.45

0.513

  recA Glaesserella parasuis strain SC1401

60.436

84.921

0.513

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

87.037

0.511

  recA Helicobacter pylori 26695

57.143

87.037

0.497

  recA Helicobacter pylori strain NCTC11637

57.143

87.037

0.497


Multiple sequence alignment