Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACEN9J_RS21350 Genome accession   NZ_CP168540
Coordinates   4621388..4622449 (+) Length   353 a.a.
NCBI ID   WP_057593705.1    Uniprot ID   -
Organism   Variovorax sp. Varisp41 strain CT11-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4616388..4627449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN9J_RS21320 (ACEN9J_21320) - 4616757..4617470 (+) 714 WP_413761988.1 SET domain-containing protein -
  ACEN9J_RS21325 (ACEN9J_21325) - 4617473..4618300 (+) 828 WP_413761989.1 biotin--[acetyl-CoA-carboxylase] ligase -
  ACEN9J_RS21330 (ACEN9J_21330) - 4618315..4618524 (+) 210 WP_413761990.1 sporulation protein -
  ACEN9J_RS21335 (ACEN9J_21335) - 4618534..4619973 (-) 1440 WP_057593708.1 sensor histidine kinase -
  ACEN9J_RS21340 (ACEN9J_21340) - 4620011..4620682 (-) 672 WP_057593707.1 response regulator transcription factor -
  ACEN9J_RS21345 (ACEN9J_21345) - 4620756..4621241 (-) 486 WP_209540139.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACEN9J_RS21350 (ACEN9J_21350) recA 4621388..4622449 (+) 1062 WP_057593705.1 recombinase RecA Machinery gene
  ACEN9J_RS21355 (ACEN9J_21355) recX 4622517..4622972 (+) 456 WP_057593704.1 recombination regulator RecX -
  ACEN9J_RS21360 (ACEN9J_21360) - 4622959..4623381 (+) 423 WP_413761991.1 SRPBCC family protein -
  ACEN9J_RS21365 (ACEN9J_21365) - 4623456..4624208 (+) 753 WP_413761992.1 hypothetical protein -
  ACEN9J_RS21370 (ACEN9J_21370) argC 4624261..4625184 (-) 924 WP_057593701.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  ACEN9J_RS21375 (ACEN9J_21375) sucC 4625393..4626559 (+) 1167 WP_057593700.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37476.05 Da        Isoelectric Point: 5.0512

>NTDB_id=1044520 ACEN9J_RS21350 WP_057593705.1 4621388..4622449(+) (recA) [Variovorax sp. Varisp41 strain CT11-41]
MDAVVKGSSIAGANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPE
SSGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIIDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADAAGAAE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1044520 ACEN9J_RS21350 WP_057593705.1 4621388..4622449(+) (recA) [Variovorax sp. Varisp41 strain CT11-41]
ATGGACGCAGTCGTCAAGGGCTCGAGCATCGCAGGCGCCAACAGCGAAAAGGCCAAGGCCCTCCAGGCCGCGCTGGCCCA
GATCGAGAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAAGGCGAGGCGCTCGAGGACATCCAGGTGGTCTCCA
CCGGCTCGCTGGGCCTCGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGTCCTGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGC
CGAGCACGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAGATCGTCGACTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTGGTCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACGGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTATGCCTCGGTGCGGCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGACCGCCA
AGATCATCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCGCGCGAGTTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATCCCGCTGCTGGCGGCGGA
CGCGGCCGGCGCGGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.176

96.317

0.782
  recA Neisseria gonorrhoeae strain FA1090

71.818

93.484

0.671
  recA Neisseria gonorrhoeae MS11

71.818

93.484

0.671
  recA Neisseria gonorrhoeae MS11

71.818

93.484

0.671
  recA Pseudomonas stutzeri DSM 10701

72.699

92.351

0.671
  recA Acinetobacter baylyi ADP1

72.086

92.351

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.513

97.167

0.666
  recA Vibrio cholerae strain A1552

68.513

97.167

0.666
  recA Glaesserella parasuis strain SC1401

72.222

91.785

0.663
  recA Acinetobacter baumannii D1279779

70.859

92.351

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.477

93.201

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.069

93.768

0.629
  recA Helicobacter pylori 26695

64.939

92.918

0.603
  recA Helicobacter pylori strain NCTC11637

64.939

92.918

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

92.635

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

63.222

93.201

0.589
  recA Streptococcus mutans UA159

62.424

93.484

0.584
  recA Lactococcus lactis subsp. cremoris KW2

61.934

93.768

0.581
  recA Streptococcus pyogenes NZ131

62.006

93.201

0.578
  recA Streptococcus pneumoniae D39

61.329

93.768

0.575
  recA Streptococcus pneumoniae TIGR4

61.329

93.768

0.575
  recA Streptococcus pneumoniae Rx1

61.329

93.768

0.575
  recA Streptococcus pneumoniae R6

61.329

93.768

0.575
  recA Streptococcus mitis NCTC 12261

61.027

93.768

0.572
  recA Streptococcus mitis SK321

61.027

93.768

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

90.935

0.561

Multiple sequence alignment