Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   O0236_RS06165 Genome accession   NZ_CP168151
Coordinates   1227241..1228314 (-) Length   357 a.a.
NCBI ID   WP_268913234.1    Uniprot ID   -
Organism   Lentilactobacillus terminaliae strain SPB1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1222241..1233314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0236_RS06155 (O0236_006155) - 1224549..1225346 (-) 798 WP_268913232.1 TIGR00282 family metallophosphoesterase -
  O0236_RS06160 (O0236_006160) rny 1225448..1227028 (-) 1581 WP_268913233.1 ribonuclease Y -
  O0236_RS06165 (O0236_006165) recA 1227241..1228314 (-) 1074 WP_268913234.1 recombinase RecA Machinery gene
  O0236_RS06170 (O0236_006170) - 1228408..1228878 (-) 471 WP_268913235.1 nicotinamide-nucleotide amidohydrolase family protein -
  O0236_RS06175 (O0236_006175) pgsA 1228947..1229528 (-) 582 WP_268913236.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  O0236_RS06180 (O0236_006180) - 1229550..1230554 (-) 1005 WP_268913237.1 helix-turn-helix domain-containing protein -
  O0236_RS06185 (O0236_006185) yfmH 1230634..1231917 (-) 1284 WP_268913238.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  O0236_RS06190 (O0236_006190) yfmF 1231904..1233181 (-) 1278 WP_268913239.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38437.47 Da        Isoelectric Point: 4.8405

>NTDB_id=1042672 O0236_RS06165 WP_268913234.1 1227241..1228314(-) (recA) [Lentilactobacillus terminaliae strain SPB1-3]
MADQRKAALDKALKGIEKEFGKGSIMRMGDKADTQISTVPTGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPVYATHLGVNIDDLLLSQPDTGEQGLEITDALVTSGAIDIVVIDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGTDIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGQGVSQSGELIDMAVEKDIVNKSGSWYSYGEERIGQGRENAKAYLVDHPDIYAEVKT
KVRDAYGIPDVDDDGSSGKAKTDATVEDETLDLDTDK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1042672 O0236_RS06165 WP_268913234.1 1227241..1228314(-) (recA) [Lentilactobacillus terminaliae strain SPB1-3]
ATGGCTGACCAAAGAAAAGCTGCCTTAGATAAGGCTTTAAAGGGTATTGAAAAAGAGTTCGGTAAGGGCTCCATCATGCG
AATGGGCGATAAAGCCGATACTCAAATCTCAACTGTTCCAACTGGTTCTTTAGCTTTAGATGAAGCTTTAGGAGTAGGTG
GATACCCTCGGGGACGAATCGTTGAAATTTATGGACCTGAAAGTTCTGGTAAAACTACGGTGGCATTGCATGCAGTTGCC
GAAGTTCAAAAGCGTGGAGGAACTGCAGCGTATATTGATGCTGAAAATGCACTTGATCCAGTTTATGCCACTCATTTAGG
CGTAAATATCGATGACTTACTATTGTCTCAACCTGATACAGGTGAACAAGGACTAGAAATTACAGATGCTTTGGTAACTA
GTGGAGCAATTGATATCGTAGTTATTGATTCAGTTGCTGCTTTAGTTCCTCGTGCTGAAATCGAAGGAGAAATGGGTGAT
ACCCATGTTGGACTTCAAGCTAGATTGATGTCACAAGCACTTCGTAAATTATCTGGAACGATTAATAAAACTAAAACAAT
TGCGTTATTCATTAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGAAACCCTGAAACAACTCCTGGTGGACGAGCAT
TGAAGTTCTATTCAACTATCAGACTTGAAGTTAGAAGAGCAGAACAAATCAAAGATGGTACTGATATCATTGGTAACCGA
GTTAGAATCAAAGTGGTTAAGAACAAGGTTGCGCCACCATTTAAACGTGCTGAAGTTGATATTATGTACGGTCAAGGTGT
TTCTCAATCTGGAGAATTAATTGATATGGCTGTTGAAAAGGATATCGTTAATAAATCCGGTTCATGGTACTCATATGGTG
AGGAACGAATTGGCCAAGGTCGTGAAAATGCTAAGGCATACTTAGTTGATCATCCTGACATTTATGCAGAGGTTAAAACT
AAGGTTCGTGATGCATATGGTATTCCTGATGTGGATGATGATGGTAGCAGTGGTAAAGCAAAAACTGATGCAACTGTTGA
AGATGAAACATTAGATTTAGATACTGATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.203

99.16

0.815
  recA Bacillus subtilis subsp. subtilis str. 168

74.925

93.838

0.703
  recA Streptococcus mutans UA159

63.912

100

0.65
  recA Streptococcus mitis NCTC 12261

64.706

100

0.647
  recA Streptococcus mitis SK321

64.706

100

0.647
  recA Streptococcus pyogenes NZ131

64.067

100

0.644
  recA Lactococcus lactis subsp. cremoris KW2

67.372

92.717

0.625
  recA Streptococcus pneumoniae D39

67.069

92.717

0.622
  recA Streptococcus pneumoniae R6

67.069

92.717

0.622
  recA Streptococcus pneumoniae TIGR4

67.069

92.717

0.622
  recA Streptococcus pneumoniae Rx1

67.069

92.717

0.622
  recA Neisseria gonorrhoeae strain FA1090

62.614

92.157

0.577
  recA Neisseria gonorrhoeae MS11

62.614

92.157

0.577
  recA Neisseria gonorrhoeae MS11

62.614

92.157

0.577
  recA Ralstonia pseudosolanacearum GMI1000

64.537

87.675

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

91.036

0.557
  recA Vibrio cholerae strain A1552

60

92.437

0.555
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60

92.437

0.555
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.878

92.157

0.552
  recA Acinetobacter baylyi ADP1

60.494

90.756

0.549
  recA Pseudomonas stutzeri DSM 10701

60.062

90.476

0.543
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.146

91.877

0.543
  recA Acinetobacter baumannii D1279779

59.259

90.756

0.538
  recA Glaesserella parasuis strain SC1401

59.627

90.196

0.538
  recA Helicobacter pylori 26695

57.362

91.317

0.524
  recA Helicobacter pylori strain NCTC11637

57.362

91.317

0.524

Multiple sequence alignment