Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | AB9L16_RS05280 | Genome accession | NZ_CP168138 |
| Coordinates | 1175383..1176441 (+) | Length | 352 a.a. |
| NCBI ID | WP_024011876.1 | Uniprot ID | V8R9X0 |
| Organism | Pseudomonas sp. LW8 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1145242..1180869 | 1175383..1176441 | within | 0 |
Gene organization within MGE regions
Location: 1145242..1180869
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB9L16_RS05110 (AB9L16_05110) | - | 1145242..1146138 (-) | 897 | WP_130930197.1 | LysR substrate-binding domain-containing protein | - |
| AB9L16_RS05115 (AB9L16_05115) | - | 1146255..1147367 (+) | 1113 | WP_041478118.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| AB9L16_RS05120 (AB9L16_05120) | fghA | 1147456..1148301 (+) | 846 | WP_056783229.1 | S-formylglutathione hydrolase | - |
| AB9L16_RS05125 (AB9L16_05125) | ispF | 1148345..1148818 (+) | 474 | WP_375123192.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| AB9L16_RS05130 (AB9L16_05130) | truD | 1148815..1149873 (+) | 1059 | WP_375123193.1 | tRNA pseudouridine(13) synthase TruD | - |
| AB9L16_RS05135 (AB9L16_05135) | surE | 1149861..1150610 (+) | 750 | WP_024011837.1 | 5'/3'-nucleotidase SurE | - |
| AB9L16_RS05140 (AB9L16_05140) | - | 1150649..1151284 (+) | 636 | WP_172828219.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| AB9L16_RS05145 (AB9L16_05145) | - | 1151497..1152366 (+) | 870 | WP_041478115.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| AB9L16_RS05150 (AB9L16_05150) | rpoS | 1152473..1153480 (+) | 1008 | WP_016771451.1 | RNA polymerase sigma factor RpoS | - |
| AB9L16_RS05155 (AB9L16_05155) | fdxA | 1154009..1154332 (-) | 324 | WP_056783233.1 | ferredoxin FdxA | - |
| AB9L16_RS05160 (AB9L16_05160) | mutS | 1154496..1157078 (-) | 2583 | WP_056783236.1 | DNA mismatch repair protein MutS | - |
| AB9L16_RS05165 (AB9L16_05165) | - | 1157281..1158024 (+) | 744 | WP_056783238.1 | XRE family transcriptional regulator | - |
| AB9L16_RS05170 (AB9L16_05170) | - | 1158550..1158888 (+) | 339 | WP_024011844.1 | phage holin family protein | - |
| AB9L16_RS05175 (AB9L16_05175) | - | 1159041..1159625 (+) | 585 | WP_375123194.1 | hypothetical protein | - |
| AB9L16_RS05180 (AB9L16_05180) | - | 1159622..1159804 (+) | 183 | WP_024011856.1 | DUF2635 domain-containing protein | - |
| AB9L16_RS05185 (AB9L16_05185) | - | 1159804..1161300 (+) | 1497 | WP_375123195.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| AB9L16_RS05190 (AB9L16_05190) | - | 1161368..1161715 (+) | 348 | WP_007908779.1 | phage tail tube protein | - |
| AB9L16_RS05195 (AB9L16_05195) | - | 1161712..1162008 (+) | 297 | WP_007908778.1 | phage tail assembly protein | - |
| AB9L16_RS05200 (AB9L16_05200) | - | 1162139..1164028 (+) | 1890 | WP_375123196.1 | phage tail protein | - |
| AB9L16_RS05205 (AB9L16_05205) | - | 1164025..1165260 (+) | 1236 | WP_136492063.1 | DNA circularization protein | - |
| AB9L16_RS05210 (AB9L16_05210) | - | 1165265..1166314 (+) | 1050 | WP_375123197.1 | phage baseplate assembly protein | - |
| AB9L16_RS05215 (AB9L16_05215) | - | 1166466..1166975 (+) | 510 | WP_056783277.1 | phage baseplate assembly protein V | - |
| AB9L16_RS05220 (AB9L16_05220) | - | 1166975..1167373 (+) | 399 | WP_041478092.1 | phage GP46 family protein | - |
| AB9L16_RS05225 (AB9L16_05225) | - | 1167363..1168409 (+) | 1047 | WP_041478091.1 | baseplate J/gp47 family protein | - |
| AB9L16_RS05230 (AB9L16_05230) | - | 1168397..1168996 (+) | 600 | WP_056783283.1 | YmfQ family protein | - |
| AB9L16_RS05235 (AB9L16_05235) | - | 1169010..1170167 (+) | 1158 | WP_256810411.1 | phage tail protein | - |
| AB9L16_RS05240 (AB9L16_05240) | - | 1170164..1170679 (+) | 516 | WP_256810413.1 | phage tail protein | - |
| AB9L16_RS05245 (AB9L16_05245) | - | 1170824..1171750 (+) | 927 | WP_375123198.1 | hypothetical protein | - |
| AB9L16_RS05250 (AB9L16_05250) | - | 1171750..1172220 (+) | 471 | WP_375123199.1 | hypothetical protein | - |
| AB9L16_RS05255 (AB9L16_05255) | - | 1172220..1173107 (+) | 888 | WP_056783294.1 | hypothetical protein | - |
| AB9L16_RS05260 (AB9L16_05260) | - | 1173108..1173554 (+) | 447 | WP_236168043.1 | phage tail assembly chaperone | - |
| AB9L16_RS05265 (AB9L16_05265) | - | 1173668..1174234 (+) | 567 | WP_375123200.1 | glycoside hydrolase family 19 protein | - |
| AB9L16_RS05270 (AB9L16_05270) | - | 1174213..1174731 (+) | 519 | WP_375123201.1 | lysis system i-spanin subunit Rz | - |
| AB9L16_RS05275 (AB9L16_05275) | - | 1174799..1175299 (+) | 501 | WP_252887403.1 | CinA family protein | - |
| AB9L16_RS05280 (AB9L16_05280) | recA | 1175383..1176441 (+) | 1059 | WP_024011876.1 | recombinase RecA | Machinery gene |
| AB9L16_RS05285 (AB9L16_05285) | recX | 1176450..1176920 (+) | 471 | WP_041478085.1 | recombination regulator RecX | - |
| AB9L16_RS05290 (AB9L16_05290) | - | 1176980..1178095 (-) | 1116 | WP_236168040.1 | TIGR00730 family Rossman fold protein | - |
| AB9L16_RS05295 (AB9L16_05295) | - | 1178436..1178633 (+) | 198 | WP_016770569.1 | hypothetical protein | - |
| AB9L16_RS05300 (AB9L16_05300) | - | 1178634..1179059 (-) | 426 | WP_007908738.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| AB9L16_RS05305 (AB9L16_05305) | - | 1179249..1179995 (+) | 747 | WP_041478083.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| AB9L16_RS05310 (AB9L16_05310) | erdR | 1180219..1180869 (+) | 651 | WP_016771412.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37462.00 Da Isoelectric Point: 5.3111
>NTDB_id=1042495 AB9L16_RS05280 WP_024011876.1 1175383..1176441(+) (recA) [Pseudomonas sp. LW8]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADL
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADL
Nucleotide
Download Length: 1059 bp
>NTDB_id=1042495 AB9L16_RS05280 WP_024011876.1 1175383..1176441(+) (recA) [Pseudomonas sp. LW8]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATCTCTACTGGCTCTCTGGGTCTGGACATTGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCGCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAGCACGCCCTCGATCCAGAGTACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTCGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCACTGGTACCGAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCACGTCTGATGTCTCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATTTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGT
TGAAGTTCTACGCTTCGGTTCGTCTCGACATCCGCCGTACCGGTGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTACGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAATCGCCGCGAAGCTCGAGAAG
CAGCTGCGTGACAAGCTGCTGTCGCCAGCGGTGATCGCGGATTCCAAGGCCTCGGCGGTCAAAGAGACCGAAGACGACCT
GGCCGACGCTGATCTCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATCTCTACTGGCTCTCTGGGTCTGGACATTGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACACTGACCTTGTCCGTGATCGCC
CAGGCGCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAGCACGCCCTCGATCCAGAGTACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTCGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCACTGGTACCGAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCACGTCTGATGTCTCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATTTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGT
TGAAGTTCTACGCTTCGGTTCGTCTCGACATCCGCCGTACCGGTGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAAGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGTGTGCTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTACGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAATCGCCGCGAAGCTCGAGAAG
CAGCTGCGTGACAAGCTGCTGTCGCCAGCGGTGATCGCGGATTCCAAGGCCTCGGCGGTCAAAGAGACCGAAGACGACCT
GGCCGACGCTGATCTCTGA
Similar proteins
Only experimentally validated proteins are listed.