Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R8629_RS02085 Genome accession   NZ_AP028249
Coordinates   498873..499964 (+) Length   363 a.a.
NCBI ID   WP_004846417.1    Uniprot ID   -
Organism   [Ruminococcus] torques strain 17EGH124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 493873..504964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8629_RS02070 (Rumi2_04290) - 494806..496337 (+) 1532 Protein_406 ABC transporter ATP-binding protein -
  R8629_RS02075 (Rumi2_04300) - 496334..497431 (+) 1098 WP_004846419.1 ABC transporter permease -
  R8629_RS02080 (Rumi2_04310) - 497424..498416 (+) 993 WP_004846418.1 ABC transporter permease -
  R8629_RS02085 (Rumi2_04330) recA 498873..499964 (+) 1092 WP_004846417.1 recombinase RecA Machinery gene
  R8629_RS02090 (Rumi2_04340) - 499964..500578 (+) 615 WP_009320458.1 regulatory protein RecX -
  R8629_RS02095 (Rumi2_04350) rny 500675..502219 (+) 1545 WP_009321175.1 ribonuclease Y -
  R8629_RS02100 (Rumi2_04360) - 502327..502866 (+) 540 WP_009320459.1 NUDIX hydrolase -
  R8629_RS02105 (Rumi2_04370) - 502993..503532 (+) 540 WP_317648839.1 stage II sporulation protein M -
  R8629_RS02110 - 503564..504961 (-) 1398 WP_009242569.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 39356.09 Da        Isoelectric Point: 5.9753

>NTDB_id=104125 R8629_RS02085 WP_004846417.1 498873..499964(+) (recA) [[Ruminococcus] torques strain 17EGH124]
MAGNDEKKKALDAAIAKLEKDFGKGAVMKLGESGAHVAVETVPTGCLSLDIALGLGGVPKGRVIEVYGPESSGKTTVALH
MIAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDELYISQPDSGDQALEIAETMARSGAIDIIVVDSVAALVPRQEIEGD
MGDSHVGLQARLMSQALRKLTPVISKSNCIVIFINQLREKVGVMFGNPETTTGGRALKFYASVRMDVRKTETLKQSGEMV
GNHTRIKIVKNKIAPPFKEAEFDIMFGKGISKEGDILDLATKLDLVKKSGAWYAYEGDKIGQGRENAKTYLSAHPEIMEE
LEKKVREHYQLGTDSSEKDEKEVKKEKEQKGKSDDLALKGDEK

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=104125 R8629_RS02085 WP_004846417.1 498873..499964(+) (recA) [[Ruminococcus] torques strain 17EGH124]
ATGGCGGGAAATGATGAAAAGAAAAAAGCGCTGGATGCGGCGATAGCAAAACTTGAGAAGGATTTTGGAAAGGGCGCGGT
GATGAAACTCGGAGAATCAGGAGCTCATGTTGCGGTAGAGACAGTTCCTACAGGCTGTTTGAGTCTTGATATTGCGCTTG
GATTGGGCGGAGTTCCGAAAGGACGCGTGATTGAAGTTTACGGACCTGAGTCCAGCGGTAAGACAACGGTTGCGCTTCAT
ATGATTGCGGAAGTGCAGAAACGCGGCGGTATTGCGGGATTTATTGATGCGGAACATGCGTTGGATCCGGTCTATGCAAA
GAATATAGGAGTGGATATTGACGAACTATATATTTCCCAACCGGACAGCGGTGATCAGGCTTTGGAGATTGCAGAGACGA
TGGCACGTTCCGGCGCAATCGACATTATCGTTGTAGACTCTGTTGCGGCTCTTGTGCCGAGACAGGAGATTGAAGGAGAT
ATGGGAGACAGTCATGTGGGACTTCAAGCGCGATTGATGTCACAGGCACTTAGGAAACTGACTCCGGTTATCAGTAAGTC
GAACTGTATTGTGATTTTTATCAATCAGCTGAGAGAAAAAGTCGGGGTCATGTTCGGAAATCCGGAGACGACAACCGGAG
GAAGGGCGCTTAAGTTTTATGCGTCTGTCCGAATGGATGTCAGAAAAACAGAGACTCTGAAACAAAGCGGAGAGATGGTC
GGAAACCATACCCGTATTAAGATTGTGAAAAATAAGATAGCTCCGCCGTTTAAGGAGGCGGAATTTGACATTATGTTCGG
AAAAGGAATTTCAAAAGAAGGAGATATCCTTGATCTGGCTACTAAGTTAGATCTTGTTAAAAAGAGTGGAGCATGGTATG
CATATGAAGGCGATAAGATCGGACAGGGCCGGGAAAATGCAAAGACATATCTGTCTGCTCATCCGGAAATAATGGAAGAG
TTGGAAAAGAAAGTAAGAGAACATTATCAACTTGGGACAGATTCTTCGGAAAAAGATGAGAAAGAAGTGAAAAAGGAAAA
AGAACAAAAAGGGAAAAGTGACGATCTTGCATTAAAAGGTGATGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae TIGR4

61.918

100

0.623
  recA Streptococcus pneumoniae Rx1

61.918

100

0.623
  recA Streptococcus pneumoniae D39

61.918

100

0.623
  recA Streptococcus pneumoniae R6

61.918

100

0.623
  recA Streptococcus pyogenes NZ131

61.773

99.449

0.614
  recA Streptococcus mutans UA159

61.157

100

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

89.807

0.609
  recA Streptococcus mitis SK321

62.791

94.766

0.595
  recA Streptococcus mitis NCTC 12261

64.545

90.909

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

94.215

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.651

91.46

0.573
  recA Vibrio cholerae strain A1552

63.889

89.256

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.889

89.256

0.57
  recA Acinetobacter baylyi ADP1

60

95.041

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

61.791

92.287

0.57
  recA Acinetobacter baumannii D1279779

60.882

93.664

0.57
  recA Lactococcus lactis subsp. cremoris KW2

61.677

92.011

0.567
  recA Glaesserella parasuis strain SC1401

57.79

97.245

0.562
  recA Helicobacter pylori strain NCTC11637

60.976

90.358

0.551
  recA Helicobacter pylori 26695

60.976

90.358

0.551
  recA Pseudomonas stutzeri DSM 10701

61.3

88.981

0.545
  recA Neisseria gonorrhoeae MS11

61.3

88.981

0.545
  recA Neisseria gonorrhoeae MS11

61.3

88.981

0.545
  recA Neisseria gonorrhoeae strain FA1090

61.3

88.981

0.545
  recA Ralstonia pseudosolanacearum GMI1000

61.415

85.675

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.927

90.358

0.523

Multiple sequence alignment