Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QUE61_RS08250 Genome accession   NZ_AP028136
Coordinates   1642451..1643545 (-) Length   364 a.a.
NCBI ID   WP_234409737.1    Uniprot ID   -
Organism   Polynucleobacter sp. HIN5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1637451..1648545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE61_RS08225 (PHIN5_16030) - 1638372..1638899 (-) 528 WP_286306747.1 pilin -
  QUE61_RS08230 (PHIN5_16040) - 1638984..1639688 (-) 705 WP_286306748.1 TerC family protein -
  QUE61_RS08235 (PHIN5_16050) sucD 1639714..1640607 (-) 894 WP_286306749.1 succinate--CoA ligase subunit alpha -
  QUE61_RS08240 (PHIN5_16060) sucC 1640635..1641801 (-) 1167 WP_286306750.1 ADP-forming succinate--CoA ligase subunit beta -
  QUE61_RS08245 (PHIN5_16070) recX 1641954..1642451 (-) 498 WP_286306751.1 recombination regulator RecX -
  QUE61_RS08250 (PHIN5_16080) recA 1642451..1643545 (-) 1095 WP_234409737.1 recombinase RecA Machinery gene
  QUE61_RS08255 (PHIN5_16090) - 1643733..1644269 (-) 537 WP_286306752.1 DUF2878 domain-containing protein -
  QUE61_RS08260 (PHIN5_16100) - 1644280..1644774 (-) 495 WP_286306753.1 DUF3833 domain-containing protein -
  QUE61_RS08265 (PHIN5_16110) - 1644858..1645427 (-) 570 WP_286306754.1 chalcone isomerase family protein -
  QUE61_RS08270 (PHIN5_16120) - 1645537..1647681 (-) 2145 WP_286306755.1 sodium:solute symporter family protein -
  QUE61_RS08275 (PHIN5_16130) - 1647684..1647947 (-) 264 WP_286306756.1 DUF4212 domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 38984.56 Da        Isoelectric Point: 4.9043

>NTDB_id=103976 QUE61_RS08250 WP_234409737.1 1642451..1643545(-) (recA) [Polynucleobacter sp. HIN5]
MDDKKKSASSEFAGMSGEKQKALTAALAQIEKQFGKGSIMRLGDAEINQDIQVVSSGSLGLDIALGVGGLARGRVIEIYG
PESSGKTTLTLHAVAEMQKLGGTCAFIDAEHALDVQYAAKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVIDSV
AALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGTIKRTNSMVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIR
RIGSIKKGDDVIGNETRVKVVKNKVSPPFREAIFDIMYGSGISREGEIIDMGVEAEIVEKSGAWYSYNGDRIGQGKDNVR
EFLKENPEIAKEIEAKIRQKLGVKSGGTLISETLDDEEIESASA

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=103976 QUE61_RS08250 WP_234409737.1 1642451..1643545(-) (recA) [Polynucleobacter sp. HIN5]
ATGGACGACAAGAAAAAATCAGCCTCATCAGAGTTTGCAGGGATGAGTGGCGAGAAGCAAAAAGCACTAACGGCTGCCTT
GGCCCAAATTGAAAAGCAGTTTGGTAAAGGCTCGATCATGCGTCTTGGCGATGCTGAAATTAATCAAGATATTCAAGTGG
TGTCGAGTGGCTCATTGGGCCTCGATATCGCCCTAGGCGTCGGTGGTCTCGCCCGTGGCCGTGTGATTGAAATCTATGGT
CCAGAGTCCTCCGGTAAAACGACATTAACTTTGCATGCTGTGGCCGAAATGCAAAAGCTCGGTGGTACGTGCGCATTCAT
CGATGCCGAACATGCGCTTGATGTCCAGTACGCCGCTAAATTGGGTGTGGATGTCAATAATCTACTAATTTCTCAACCCG
ACACCGGTGAGCAGGCATTGGAAATTGCCGATGCGTTGGTGCGTTCAGGCTCGATTGATTTAATCGTGATTGATTCGGTG
GCAGCCTTAGTTCCAAAGGCCGAGATTGAGGGCGACATGGGTGATTCATTGCCAGGCCTGCAGGCACGACTGATGAGCCA
AGCCTTGCGTAAGTTAACTGGCACCATTAAGCGTACTAATTCCATGGTGATATTCATTAACCAAATTCGGATGAAGATTG
GTGTGATGTTTGGCTCGCCAGAAACTACGACTGGCGGTAATGCACTCAAGTTCTATGCCTCAATGCGTCTTGATATTCGT
AGGATTGGTAGCATCAAGAAGGGGGATGATGTGATCGGTAACGAGACCCGTGTGAAGGTGGTAAAGAATAAAGTCTCGCC
ACCATTCCGCGAAGCGATCTTTGACATCATGTATGGTTCAGGCATCTCCCGTGAAGGCGAAATTATCGATATGGGCGTTG
AGGCTGAGATTGTTGAAAAGTCAGGTGCTTGGTATAGCTATAACGGCGATCGCATCGGCCAAGGTAAAGATAATGTGCGC
GAGTTCTTAAAAGAGAATCCTGAGATTGCAAAAGAGATCGAAGCTAAGATTCGACAAAAGCTTGGCGTAAAGAGCGGCGG
TACCCTCATTAGCGAGACCTTGGATGATGAGGAGATTGAATCCGCGAGCGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.844

98.352

0.805
  recA Neisseria gonorrhoeae strain FA1090

72.595

94.231

0.684
  recA Neisseria gonorrhoeae MS11

72.595

94.231

0.684
  recA Neisseria gonorrhoeae MS11

72.595

94.231

0.684
  recA Acinetobacter baylyi ADP1

70.349

94.505

0.665
  recA Acinetobacter baumannii D1279779

70.058

94.505

0.662
  recA Pseudomonas stutzeri DSM 10701

68.966

95.604

0.659
  recA Vibrio cholerae strain A1552

69.617

93.132

0.648
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.617

93.132

0.648
  recA Glaesserella parasuis strain SC1401

67.049

95.879

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.953

94.505

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.035

93.956

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

65.663

91.209

0.599
  recA Helicobacter pylori 26695

65.951

89.56

0.591
  recA Helicobacter pylori strain NCTC11637

65.644

89.56

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

61.404

93.956

0.577
  recA Lactococcus lactis subsp. cremoris KW2

57.692

100

0.577
  recA Streptococcus mitis NCTC 12261

60.174

94.505

0.569
  recA Streptococcus pneumoniae R6

61.261

91.484

0.56
  recA Streptococcus pneumoniae Rx1

61.261

91.484

0.56
  recA Streptococcus pneumoniae D39

61.261

91.484

0.56
  recA Streptococcus pneumoniae TIGR4

61.261

91.484

0.56
  recA Streptococcus mitis SK321

60.661

91.484

0.555
  recA Streptococcus mutans UA159

60.909

90.659

0.552
  recA Streptococcus pyogenes NZ131

60.79

90.385

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

88.187

0.536

Multiple sequence alignment