Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABQ179_RS12840 Genome accession   NZ_CP167817
Coordinates   3017286..3018320 (-) Length   344 a.a.
NCBI ID   WP_349811735.1    Uniprot ID   -
Organism   Xanthomonas dyei strain WHRI 5755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3012286..3023320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ179_RS12825 (ABQ179_012825) csrA 3013444..3013656 (-) 213 WP_003481884.1 carbon storage regulator CsrA -
  ABQ179_RS12830 (ABQ179_012830) alaS 3013796..3016444 (-) 2649 WP_104616153.1 alanine--tRNA ligase -
  ABQ179_RS12835 (ABQ179_012835) recX 3016546..3017034 (-) 489 WP_104616154.1 recombination regulator RecX -
  ABQ179_RS12840 (ABQ179_012840) recA 3017286..3018320 (-) 1035 WP_349811735.1 recombinase RecA Machinery gene
  ABQ179_RS12845 (ABQ179_012845) lexA 3018493..3019134 (-) 642 WP_104616156.1 transcriptional repressor LexA -
  ABQ179_RS12850 (ABQ179_012850) ubiB 3019201..3020877 (-) 1677 WP_349811734.1 2-polyprenylphenol 6-hydroxylase -
  ABQ179_RS12855 (ABQ179_012855) - 3021313..3022794 (-) 1482 WP_372468656.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37152.77 Da        Isoelectric Point: 5.3603

>NTDB_id=1039555 ABQ179_RS12840 WP_349811735.1 3017286..3018320(-) (recA) [Xanthomonas dyei strain WHRI 5755]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEIIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRHKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKAGAWYSYCDERIGQGKDNARGYLRDNPQVAAKL
EAELREKFQPAEAPREAGDDAEKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1039555 ABQ179_RS12840 WP_349811735.1 3017286..3018320(-) (recA) [Xanthomonas dyei strain WHRI 5755]
ATGGACGAGAACAAGAAGCGTGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGTAAGGGCTCGGTGATGCG
CATGGGCGATCGCGTGATCGAAGCGGTCGAAATCATTCCGACCGGTTCGCTGATGTTGGATATCGCACTGGGGATCGGCG
GCCTGCCGAAGGGCCGCGTCGTGGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCCATTGCG
CAATGTCAGAAGCTGGGTGGCACCGCTGCGTTCATCGACGCCGAGCATGCGCTCGACCCGATCTACGCTGCCAAGCTGGG
CGTCAATGTCGATGACCTGTTGCTGTCGCAGCCGGACACCGGTGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CGAGCTCGGTCGACATTGTGGTGATCGACTCGGTGGCTGCACTGACGCCGAAGGCGGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCAGGTCTGCAGGCGCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGGTCCAACACCCT
GGTGGTCTTCATCAACCAGTTGCGCCACAAGATCGGCGTCATGATGCCGGGTCAGAGCCCGGAAGTGACCACCGGCGGTA
ACGCGCTCAAGTTCTACGCCTCGGTGCGGCTGGACATCCGTCGTATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCGTGACCGAAATCCTCTACGGCGA
AGGCATCAGCCGCGAGGGCGAATTGATCGACATGGGCGTGGAAGCCAAGCTGGTAGAAAAGGCAGGTGCCTGGTACAGCT
ATTGCGACGAGCGCATCGGCCAGGGTAAGGACAATGCACGTGGTTACCTGCGCGACAATCCGCAGGTGGCAGCCAAGCTC
GAAGCCGAGCTGCGCGAGAAGTTCCAGCCCGCCGAAGCTCCGCGCGAGGCGGGCGACGACGCCGAGAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.477

100

0.695
  recA Pseudomonas stutzeri DSM 10701

69.883

99.419

0.695
  recA Ralstonia pseudosolanacearum GMI1000

75.08

90.988

0.683
  recA Acinetobacter baumannii D1279779

71.341

95.349

0.68
  recA Vibrio cholerae strain A1552

70.245

94.767

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

94.767

0.666
  recA Glaesserella parasuis strain SC1401

64.826

100

0.648
  recA Neisseria gonorrhoeae MS11

67.791

94.767

0.642
  recA Neisseria gonorrhoeae MS11

67.791

94.767

0.642
  recA Neisseria gonorrhoeae strain FA1090

67.791

94.767

0.642
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.275

97.093

0.605
  recA Latilactobacillus sakei subsp. sakei 23K

61.078

97.093

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.125

93.023

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

61.846

94.477

0.584
  recA Streptococcus mitis SK321

60.976

95.349

0.581
  recA Helicobacter pylori strain NCTC11637

60.241

96.512

0.581
  recA Streptococcus pneumoniae D39

60.671

95.349

0.578
  recA Streptococcus pneumoniae Rx1

60.671

95.349

0.578
  recA Streptococcus pneumoniae R6

60.671

95.349

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

95.349

0.578
  recA Helicobacter pylori 26695

59.94

96.512

0.578
  recA Streptococcus mitis NCTC 12261

60.366

95.349

0.576
  recA Streptococcus pyogenes NZ131

60

95.93

0.576
  recA Streptococcus mutans UA159

59.697

95.93

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.077

94.477

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.576

95.93

0.552

Multiple sequence alignment