Detailed information NTG0103934

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: QUF32_RS02455
• Genome accession: NZ_AP028128
• Coordinates: 515263..516315 (+)
• Length: 350 a.a.
• NCBI ID: WP_024374201.1
• Uniprot ID: -
• Organism: Vibrio fluvialis strain IDH05335
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	516450..517829	515263..516315	flank	135

Gene organization within MGE regions

Location: 515263..517829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QUF32_RS02455 (KKIDH5335_04350)	recA	515263..516315 (+)	1053	WP_024374201.1	recombinase RecA	Machinery gene
QUF32_RS02460 (KKIDH5335_04360)	-	516450..517829 (+)	1380	WP_020433959.1	IS4 family transposase	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 38078.56 Da
• Isoelectric Point: 4.9925

>NTDB_id=103934 QUF32_RS02455 WP_024374201.1 515263..516315(+) (recA) [Vibrio fluvialis strain IDH05335]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIS
AAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVKHKLVEKAGAWYSYNGDKIGQGKANACKYLRENPEVAKFIDS
KLREMLLNPEQVAVSEEPEFGSVPEQEEEF

Nucleotide

• Length: 1053 bp

>NTDB_id=103934 QUF32_RS02455 WP_024374201.1 515263..516315(+) (recA) [Vibrio fluvialis strain IDH05335]
ATGGACGAGAACAAACAGAAGGCTCTGGCCGCAGCCCTGGGTCAAATTGAAAAGCAATTCGGTAAAGGTTCTATCATGCG
CTTGGGTGACAACCGCACGATGGACGTAGAAACGATTTCTACCGGTTCACTTTCTCTGGATATCGCCTTGGGTGCGGGTG
GCCTGCCAATGGGTCGTATCGTGGAAATCTACGGTCCGGAATCCTCAGGTAAAACGACGCTGACTCTAGAACTGATCTCA
GCGGCTCAGCGCGAAGGTAAAACATGTGCCTTCATCGATGCAGAGCACGCTCTGGATCCAGTTTATGCTCGTCGTCTGGG
CGTGAAAATTGATGAACTGCTGGTGTCTCAGCCAGATACTGGTGAACAGGCGCTGGAAATCTGTGATGCATTGGCGCGTT
CAGGTGCTGTTGACGTTATCGTCGTTGACTCGGTTGCAGCACTGACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAGGCGCGTATGCTGTCGCAAGCGATGCGTAAACTGACGGGTAACCTGAAACAGTCAAACTGTAT
GTGCATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACCACTACTGGTGGTAACGCAC
TGAAATTCTATGCATCTGTTCGTCTGGATATTCGTCGTACCGGTTCTATCAAAGAAGGCGATGAAGTTGTCGGTAACGAA
ACTCGTATCAAAGTAGTGAAGAACAAGATTGCGGCACCATTTAAAGAAGCCAACACGCAAATCATGTACGGCCAGGGCTT
TAACCGTGAAGGTGAGCTGATTGAACTGGGCGTGAAGCACAAGCTGGTCGAAAAAGCAGGTGCTTGGTACAGCTACAACG
GCGACAAGATCGGTCAGGGTAAAGCAAACGCATGTAAATATCTGAGAGAAAACCCTGAAGTGGCTAAATTTATCGACAGC
AAACTGCGTGAAATGCTGCTGAACCCTGAACAAGTTGCGGTCAGCGAAGAGCCGGAATTTGGTTCAGTGCCAGAACAAGA
AGAAGAGTTTTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	90.652	100	0.914
recA	Vibrio cholerae O1 biovar El Tor strain E7946	90.652	100	0.914
recA	Pseudomonas stutzeri DSM 10701	72.727	97.429	0.709
recA	Acinetobacter baumannii D1279779	71.304	98.571	0.703
recA	Acinetobacter baylyi ADP1	71.848	97.429	0.7
recA	Glaesserella parasuis strain SC1401	71.601	94.571	0.677
recA	Neisseria gonorrhoeae MS11	65.714	100	0.657
recA	Neisseria gonorrhoeae MS11	65.714	100	0.657
recA	Neisseria gonorrhoeae strain FA1090	65.714	100	0.657
recA	Ralstonia pseudosolanacearum GMI1000	72.026	88.857	0.64
recA	Streptococcus mitis SK321	60.114	100	0.603
recA	Streptococcus mitis NCTC 12261	59.829	100	0.6
recA	Streptococcus pneumoniae TIGR4	59.714	100	0.597
recA	Streptococcus pneumoniae R6	59.714	100	0.597
recA	Streptococcus pneumoniae D39	59.714	100	0.597
recA	Streptococcus pneumoniae Rx1	59.714	100	0.597
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	60.294	97.143	0.586
recA	Helicobacter pylori 26695	59.706	97.143	0.58
recA	Helicobacter pylori strain NCTC11637	59.412	97.143	0.577
recA	Bacillus subtilis subsp. subtilis str. 168	62.305	91.714	0.571
recA	Streptococcus mutans UA159	61.538	92.857	0.571
recA	Streptococcus pyogenes NZ131	61.231	92.857	0.569
recA	Lactococcus lactis subsp. cremoris KW2	59.403	95.714	0.569
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.639	94.857	0.566
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.371	91.714	0.563
recA	Latilactobacillus sakei subsp. sakei 23K	56.125	100	0.563