Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | AACH31_RS03275 | Genome accession | NZ_AP028127 |
| Coordinates | 683517..684539 (+) | Length | 340 a.a. |
| NCBI ID | WP_161832662.1 | Uniprot ID | - |
| Organism | Turicibacter faecis strain TC023 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 639316..687905 | 683517..684539 | within | 0 |
Gene organization within MGE regions
Location: 639316..687905
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AACH31_RS03050 (T23_05580) | - | 639316..640044 (+) | 729 | WP_262950703.1 | zinc metallopeptidase | - |
| AACH31_RS03055 (T23_05590) | - | 640317..641027 (-) | 711 | WP_161832274.1 | hypothetical protein | - |
| AACH31_RS03060 (T23_05600) | - | 641948..642652 (+) | 705 | WP_161832273.1 | phospholipase D-like domain-containing protein | - |
| AACH31_RS03065 (T23_05610) | - | 642736..644067 (-) | 1332 | WP_338617877.1 | recombinase family protein | - |
| AACH31_RS03070 (T23_05620) | - | 644089..645447 (-) | 1359 | WP_338617878.1 | recombinase family protein | - |
| AACH31_RS03075 (T23_05630) | - | 645883..646470 (-) | 588 | WP_338617879.1 | helix-turn-helix domain-containing protein | - |
| AACH31_RS03080 (T23_05640) | - | 646825..647073 (+) | 249 | WP_161832269.1 | helix-turn-helix transcriptional regulator | - |
| AACH31_RS03085 (T23_05650) | - | 647227..647547 (+) | 321 | WP_262951197.1 | hypothetical protein | - |
| AACH31_RS03090 (T23_05660) | - | 647559..647762 (+) | 204 | WP_161832267.1 | hypothetical protein | - |
| AACH31_RS03095 | - | 648078..648950 (+) | 873 | WP_338617881.1 | hypothetical protein | - |
| AACH31_RS03100 (T23_05680) | - | 649101..649310 (+) | 210 | WP_338617882.1 | hypothetical protein | - |
| AACH31_RS03105 (T23_05690) | - | 649300..649749 (+) | 450 | WP_338617884.1 | hypothetical protein | - |
| AACH31_RS03110 (T23_05700) | - | 649857..651257 (-) | 1401 | WP_338617886.1 | P-loop NTPase fold protein | - |
| AACH31_RS03115 (T23_05710) | - | 651465..652313 (+) | 849 | WP_338617888.1 | hypothetical protein | - |
| AACH31_RS03120 (T23_05720) | - | 652385..652543 (+) | 159 | WP_338617889.1 | hypothetical protein | - |
| AACH31_RS03125 (T23_05730) | - | 652715..653149 (+) | 435 | WP_338617890.1 | phage holin family protein | - |
| AACH31_RS03130 (T23_05740) | - | 653149..653916 (+) | 768 | WP_338617892.1 | N-acetylmuramoyl-L-alanine amidase | - |
| AACH31_RS03135 (T23_05750) | - | 655448..655651 (+) | 204 | WP_338617893.1 | helix-turn-helix transcriptional regulator | - |
| AACH31_RS03140 (T23_05760) | - | 655663..656667 (+) | 1005 | WP_338617895.1 | DNA cytosine methyltransferase | - |
| AACH31_RS03145 (T23_05770) | - | 656712..657611 (-) | 900 | WP_338617896.1 | hypothetical protein | - |
| AACH31_RS03150 (T23_05780) | - | 657884..658330 (+) | 447 | WP_338617897.1 | NUDIX domain-containing protein | - |
| AACH31_RS03155 (T23_05790) | - | 658419..659480 (+) | 1062 | WP_338617898.1 | DNA cytosine methyltransferase | - |
| AACH31_RS03160 (T23_05800) | - | 659470..660525 (+) | 1056 | WP_338617899.1 | DUF262 domain-containing protein | - |
| AACH31_RS03165 (T23_05810) | - | 660527..661195 (+) | 669 | WP_338617900.1 | MAE_28990/MAE_18760 family HEPN-like nuclease | - |
| AACH31_RS03170 (T23_05820) | - | 662224..663003 (+) | 780 | WP_338617901.1 | HNH endonuclease | - |
| AACH31_RS03175 (T23_05830) | - | 663591..663797 (+) | 207 | WP_161832648.1 | DUF1659 domain-containing protein | - |
| AACH31_RS03180 (T23_05840) | - | 663818..664060 (+) | 243 | WP_161832649.1 | DUF2922 domain-containing protein | - |
| AACH31_RS03185 (T23_05850) | - | 664913..666379 (+) | 1467 | WP_338617902.1 | hypothetical protein | - |
| AACH31_RS03190 (T23_05860) | - | 666514..667236 (+) | 723 | WP_338617903.1 | metallophosphoesterase | - |
| AACH31_RS03195 (T23_05870) | - | 667282..667725 (+) | 444 | WP_338617904.1 | HD domain-containing protein | - |
| AACH31_RS03200 (T23_05880) | - | 667709..669982 (+) | 2274 | WP_338617906.1 | DUF3427 domain-containing protein | - |
| AACH31_RS03205 (T23_05890) | - | 670373..670765 (-) | 393 | WP_161832651.1 | (deoxy)nucleoside triphosphate pyrophosphohydrolase | - |
| AACH31_RS03210 (T23_05900) | - | 670792..671664 (-) | 873 | WP_161832652.1 | YitT family protein | - |
| AACH31_RS03215 (T23_05910) | dapB | 672157..672867 (+) | 711 | WP_161832653.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| AACH31_RS03220 (T23_05920) | - | 672966..674123 (+) | 1158 | WP_161832654.1 | CCA tRNA nucleotidyltransferase | - |
| AACH31_RS03225 (T23_05930) | - | 674116..674592 (+) | 477 | WP_161832655.1 | hypothetical protein | - |
| AACH31_RS03230 (T23_05940) | - | 674604..675278 (+) | 675 | WP_262950435.1 | DnaD domain protein | - |
| AACH31_RS03235 (T23_05950) | nth | 675296..675946 (+) | 651 | WP_161832657.1 | endonuclease III | - |
| AACH31_RS03240 (T23_05960) | - | 675992..676882 (-) | 891 | WP_161832944.1 | IS3 family transposase | - |
| AACH31_RS03245 (T23_05970) | - | 676837..677370 (-) | 534 | WP_338617908.1 | helix-turn-helix domain-containing protein | - |
| AACH31_RS03250 (T23_05980) | - | 677453..680506 (-) | 3054 | WP_262953847.1 | PBP1A family penicillin-binding protein | - |
| AACH31_RS03255 (T23_05990) | recU | 680528..681112 (-) | 585 | WP_161832659.1 | Holliday junction resolvase RecU | - |
| AACH31_RS03265 (T23_06000) | - | 681907..682773 (+) | 867 | WP_161832660.1 | RodZ domain-containing protein | - |
| AACH31_RS03270 (T23_06010) | pgsA | 682782..683363 (+) | 582 | WP_161832661.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| AACH31_RS03275 (T23_06020) | recA | 683517..684539 (+) | 1023 | WP_161832662.1 | recombinase RecA | Machinery gene |
| AACH31_RS03280 (T23_06030) | - | 684677..685432 (-) | 756 | WP_338617909.1 | ISL3 family transposase | - |
| AACH31_RS03285 (T23_06040) | - | 685444..686013 (-) | 570 | WP_338617910.1 | transposase family protein | - |
| AACH31_RS03290 (T23_06060) | rny | 686352..687905 (+) | 1554 | WP_161831941.1 | ribonuclease Y | - |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 36679.03 Da Isoelectric Point: 4.9720
>NTDB_id=103907 AACH31_RS03275 WP_161832662.1 683517..684539(+) (recA) [Turicibacter faecis strain TC023]
MSNNREAALMQALKSIEKQYGKGSVMKLGEKTDTRIEVISSGSLALDSALGVGGYPRGRVIEIYGPESSGKTTFALHAIA
EVQKSGGTAAFIDAEHALDPAYAAKLGVDTDELLVSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGAINTTKTIAIFINQIREKVGIMFGNPEVTPGGRALKFYSTIRLEVRRGEAIKLGTDIVGNV
AKIKVVKNKVAPPFKTVEVDVMYGEGVSKQGEILDLAVDYNIIEKSGSWYSYRGEKMGQGRENAKLFLKENPFIMEEIAD
LIRAELNIPTSGHEEIMIEE
MSNNREAALMQALKSIEKQYGKGSVMKLGEKTDTRIEVISSGSLALDSALGVGGYPRGRVIEIYGPESSGKTTFALHAIA
EVQKSGGTAAFIDAEHALDPAYAAKLGVDTDELLVSQPDTGEQALEIAEALVRSGAIDILVVDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGAINTTKTIAIFINQIREKVGIMFGNPEVTPGGRALKFYSTIRLEVRRGEAIKLGTDIVGNV
AKIKVVKNKVAPPFKTVEVDVMYGEGVSKQGEILDLAVDYNIIEKSGSWYSYRGEKMGQGRENAKLFLKENPFIMEEIAD
LIRAELNIPTSGHEEIMIEE
Nucleotide
Download Length: 1023 bp
>NTDB_id=103907 AACH31_RS03275 WP_161832662.1 683517..684539(+) (recA) [Turicibacter faecis strain TC023]
ATGAGTAATAATCGTGAAGCTGCGCTTATGCAAGCGTTGAAAAGTATTGAAAAGCAATACGGTAAAGGATCTGTCATGAA
GTTAGGAGAAAAAACGGATACTCGAATAGAGGTTATTTCGTCGGGATCTTTAGCGTTAGACTCGGCCTTAGGTGTTGGTG
GTTATCCTCGTGGACGTGTCATTGAAATTTATGGTCCAGAGAGTTCTGGTAAAACAACTTTTGCATTACATGCGATTGCA
GAAGTACAAAAATCAGGTGGAACGGCAGCTTTTATTGATGCAGAGCATGCCCTTGATCCAGCTTATGCGGCAAAATTAGG
TGTAGATACAGACGAGTTACTTGTTTCCCAACCAGATACTGGGGAACAGGCGTTAGAAATTGCCGAGGCTTTAGTTCGAA
GTGGAGCTATTGATATTTTAGTTGTCGATTCAGTAGCGGCATTAGTTCCACGTGCGGAAATTGAAGGGGAGATGGGTGAT
TCGCATGTTGGATTACAGGCTCGCCTTATGTCACAGGCTTTACGTAAATTATCTGGAGCAATTAATACGACAAAGACAAT
TGCAATCTTTATTAACCAAATTCGTGAGAAAGTTGGAATTATGTTTGGTAACCCAGAAGTTACACCAGGTGGAAGAGCGT
TAAAGTTCTATTCAACAATTAGACTTGAGGTGCGACGCGGTGAGGCGATTAAGCTTGGAACAGATATCGTCGGAAATGTT
GCTAAGATTAAAGTTGTAAAAAATAAGGTAGCTCCTCCATTTAAAACAGTTGAGGTTGATGTGATGTACGGTGAAGGGGT
ATCTAAACAAGGTGAGATTCTCGATTTAGCGGTTGATTATAATATCATTGAAAAAAGCGGTTCTTGGTATTCTTATCGAG
GAGAAAAGATGGGACAAGGACGTGAAAATGCTAAATTATTCCTTAAAGAAAATCCATTCATTATGGAAGAAATTGCAGAC
CTTATTCGAGCAGAATTGAATATTCCTACATCAGGACATGAGGAAATCATGATTGAGGAATAA
ATGAGTAATAATCGTGAAGCTGCGCTTATGCAAGCGTTGAAAAGTATTGAAAAGCAATACGGTAAAGGATCTGTCATGAA
GTTAGGAGAAAAAACGGATACTCGAATAGAGGTTATTTCGTCGGGATCTTTAGCGTTAGACTCGGCCTTAGGTGTTGGTG
GTTATCCTCGTGGACGTGTCATTGAAATTTATGGTCCAGAGAGTTCTGGTAAAACAACTTTTGCATTACATGCGATTGCA
GAAGTACAAAAATCAGGTGGAACGGCAGCTTTTATTGATGCAGAGCATGCCCTTGATCCAGCTTATGCGGCAAAATTAGG
TGTAGATACAGACGAGTTACTTGTTTCCCAACCAGATACTGGGGAACAGGCGTTAGAAATTGCCGAGGCTTTAGTTCGAA
GTGGAGCTATTGATATTTTAGTTGTCGATTCAGTAGCGGCATTAGTTCCACGTGCGGAAATTGAAGGGGAGATGGGTGAT
TCGCATGTTGGATTACAGGCTCGCCTTATGTCACAGGCTTTACGTAAATTATCTGGAGCAATTAATACGACAAAGACAAT
TGCAATCTTTATTAACCAAATTCGTGAGAAAGTTGGAATTATGTTTGGTAACCCAGAAGTTACACCAGGTGGAAGAGCGT
TAAAGTTCTATTCAACAATTAGACTTGAGGTGCGACGCGGTGAGGCGATTAAGCTTGGAACAGATATCGTCGGAAATGTT
GCTAAGATTAAAGTTGTAAAAAATAAGGTAGCTCCTCCATTTAAAACAGTTGAGGTTGATGTGATGTACGGTGAAGGGGT
ATCTAAACAAGGTGAGATTCTCGATTTAGCGGTTGATTATAATATCATTGAAAAAAGCGGTTCTTGGTATTCTTATCGAG
GAGAAAAGATGGGACAAGGACGTGAAAATGCTAAATTATTCCTTAAAGAAAATCCATTCATTATGGAAGAAATTGCAGAC
CTTATTCGAGCAGAATTGAATATTCCTACATCAGGACATGAGGAAATCATGATTGAGGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.