Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB9L15_RS15430 Genome accession   NZ_CP167119
Coordinates   3031420..3032481 (-) Length   353 a.a.
NCBI ID   WP_008178923.1    Uniprot ID   A0A1H9CZG2
Organism   Lysinibacillus fusiformis strain LS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3026420..3037481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L15_RS15410 (AB9L15_15415) - 3026451..3027167 (-) 717 WP_375105629.1 YveK family protein -
  AB9L15_RS15415 (AB9L15_15420) - 3027237..3028394 (-) 1158 WP_375105630.1 O-antigen ligase family protein -
  AB9L15_RS15420 (AB9L15_15425) - 3028426..3029190 (-) 765 WP_008178916.1 tyrosine-protein phosphatase -
  AB9L15_RS15425 (AB9L15_15430) rny 3029337..3030896 (-) 1560 WP_008178918.1 ribonuclease Y -
  AB9L15_RS15430 (AB9L15_15435) recA 3031420..3032481 (-) 1062 WP_008178923.1 recombinase RecA Machinery gene
  AB9L15_RS15435 (AB9L15_15440) cinA 3032643..3033902 (-) 1260 WP_008178924.1 competence/damage-inducible protein A Machinery gene
  AB9L15_RS15440 (AB9L15_15445) pgsA 3033920..3034498 (-) 579 WP_008178927.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB9L15_RS15445 (AB9L15_15450) - 3034546..3035475 (-) 930 WP_375105631.1 helix-turn-helix domain-containing protein -
  AB9L15_RS15450 (AB9L15_15455) - 3035492..3036277 (-) 786 WP_008178931.1 DUF3388 domain-containing protein -
  AB9L15_RS15455 (AB9L15_15460) - 3036504..3036761 (-) 258 WP_008178933.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38108.20 Da        Isoelectric Point: 4.7354

>NTDB_id=1038237 AB9L15_RS15430 WP_008178923.1 3031420..3032481(-) (recA) [Lysinibacillus fusiformis strain LS1]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQARGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENTAVLEEISNK
IRSSYGIAANSYTIAAHEEDEMDEELMSLLDEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1038237 AB9L15_RS15430 WP_008178923.1 3031420..3032481(-) (recA) [Lysinibacillus fusiformis strain LS1]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTTTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCAATCATGAAACT
CGGTGAAAAAACCGACTTAGAAATTGCGACATCCTCAAGTGGATCATTAGCACTTGACGCGGCATTAGGCGTAGGTGGCT
ATCCACGTGGACGTATTATTGAAGTATATGGTCCTGAATCATCAGGTAAAACAACAGTTGCTTTACATGCTATTGCTGAA
GTACAAGCAAGAGGTGGACAAGCAGCATTTATCGATGCAGAACATGCATTGGACCCAATCTATGCTCAAAAATTGGGTGT
CAACATTGATGAGTTATTATTATCACAGCCAGATACAGGGGAACAAGCACTTGAAATCGCAGAAGCACTAGTTCGTAGTG
GTGCAATTGATATCATTGTTATTGACTCCGTTGCTGCTTTAGTGCCAAAAGCTGAAATTGAAGGGGATATGGGTGATTCT
CATGTCGGCTTACAAGCCCGCTTAATGTCACAGGCATTACGTAAACTTTCAGGTTCTATTAACAAATCAAAAACGATTGC
TATATTCATTAACCAAATTCGTGAAAAAATCGGGGTAATGTTCGGAAATCCGGAAACAACACCAGGTGGTCGTGCCCTTA
AATTCTACAGTTCTGTACGTTTAGAAGTTCGCCGTGCAGAAGCTATTAAGCAAGGTAATGATATTGTTGGTAACCGTACG
AAAATTAAAATTGTGAAAAATAAAGTAGCGCCGCCTTTCCGTACAGCTGAAGTTGATATTATGTATGGAGAAGGTATTTC
TAAAGAAGGCGAAACAGTTGATTTAGGTGTAGAATTAGACATCGTGCAAAAAAGTGGATCTTGGTATGCATATGGCGATG
AGCGTCTAGGTCAAGGACGAGAAAATGCAAAACAATATTTAAAAGAAAACACTGCTGTTTTGGAAGAAATCTCAAACAAA
ATTCGATCTTCTTATGGTATTGCTGCTAATTCTTATACAATTGCTGCACATGAAGAAGACGAGATGGATGAAGAATTAAT
GTCACTTCTTGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H9CZG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.758

93.484

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

92.351

0.7
  recA Streptococcus mitis SK321

64.82

100

0.663
  recA Streptococcus mitis NCTC 12261

64.543

100

0.66
  recA Streptococcus pneumoniae Rx1

65.994

98.3

0.649
  recA Streptococcus pneumoniae D39

65.994

98.3

0.649
  recA Streptococcus pneumoniae R6

65.994

98.3

0.649
  recA Streptococcus pneumoniae TIGR4

65.994

98.3

0.649
  recA Streptococcus pyogenes NZ131

64.023

100

0.64
  recA Streptococcus mutans UA159

64.756

98.867

0.64
  recA Lactococcus lactis subsp. cremoris KW2

66.168

94.618

0.626
  recA Neisseria gonorrhoeae strain FA1090

63.401

98.3

0.623
  recA Neisseria gonorrhoeae MS11

63.401

98.3

0.623
  recA Neisseria gonorrhoeae MS11

63.401

98.3

0.623
  recA Helicobacter pylori strain NCTC11637

61.823

99.433

0.615
  recA Helicobacter pylori 26695

61.538

99.433

0.612
  recA Acinetobacter baylyi ADP1

61.207

98.584

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

97.167

0.603
  recA Glaesserella parasuis strain SC1401

60.519

98.3

0.595
  recA Ralstonia pseudosolanacearum GMI1000

64.22

92.635

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.351

0.589
  recA Acinetobacter baumannii D1279779

60.704

96.601

0.586
  recA Pseudomonas stutzeri DSM 10701

59.593

97.45

0.581
  recA Vibrio cholerae strain A1552

63.75

90.652

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.652

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.501

0.572

Multiple sequence alignment