Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB8617_RS10260 Genome accession   NZ_CP166995
Coordinates   2229997..2231046 (+) Length   349 a.a.
NCBI ID   WP_409438870.1    Uniprot ID   -
Organism   Psychromonas sp. GE-S-Ul-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2224997..2236046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8617_RS10245 (AB8617_10240) - 2225318..2226457 (-) 1140 WP_409438868.1 Na/Pi symporter -
  AB8617_RS10250 (AB8617_10245) mutS 2226750..2229350 (-) 2601 WP_409438869.1 DNA mismatch repair protein MutS -
  AB8617_RS10255 (AB8617_10250) - 2229396..2229902 (+) 507 WP_290039397.1 CinA family protein -
  AB8617_RS10260 (AB8617_10255) recA 2229997..2231046 (+) 1050 WP_409438870.1 recombinase RecA Machinery gene
  AB8617_RS10265 (AB8617_10260) - 2231138..2231455 (-) 318 WP_290039395.1 AzlD domain-containing protein -
  AB8617_RS10270 (AB8617_10265) - 2231452..2232162 (-) 711 WP_418135327.1 AzlC family ABC transporter permease -
  AB8617_RS10275 (AB8617_10270) hemW 2232221..2233363 (-) 1143 WP_409438871.1 radical SAM family heme chaperone HemW -
  AB8617_RS10280 (AB8617_10275) - 2233539..2234153 (-) 615 WP_290039392.1 XTP/dITP diphosphatase -
  AB8617_RS10285 (AB8617_10280) - 2234320..2234865 (-) 546 WP_290039391.1 YggT family protein -
  AB8617_RS10290 (AB8617_10285) proC 2234903..2235727 (-) 825 WP_290039390.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37279.72 Da        Isoelectric Point: 5.1330

>NTDB_id=1036647 AB8617_RS10260 WP_409438870.1 2229997..2231046(+) (recA) [Psychromonas sp. GE-S-Ul-11]
MSQDANKDKALAAALGQIEKQFGKGSIMRLGDGAAAMMEVESVSTGSLGLDVALGIGGLPYGRVVEIYGPESSGKTTLTL
QVIAEAQKQGKTCAFIDAEHALDPSYARKLGVNVDDLLISQPDTGEQALEICDMLVRSGAVGVVIVDSVAALTPKAEIEG
DMGDSHMGLQARLMSQALRKLTGNIKQTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGDEI
TGNETRVKVVKNKVSPPFKQAEFQILYGQGINNLGELIDLGVKQELVEKSGSWYAYNGSKIGQGKTNACKFLQENPALAE
ELNGKLREILLAKPVLTPETQEQDGPAPE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1036647 AB8617_RS10260 WP_409438870.1 2229997..2231046(+) (recA) [Psychromonas sp. GE-S-Ul-11]
ATGAGTCAAGACGCAAATAAAGATAAAGCATTAGCGGCGGCGTTAGGCCAAATTGAAAAGCAATTTGGTAAAGGTTCAAT
CATGCGTCTTGGAGACGGTGCAGCAGCCATGATGGAAGTTGAATCAGTGTCAACTGGCTCATTAGGTCTAGATGTTGCTT
TAGGCATAGGCGGTTTACCTTACGGCCGTGTTGTTGAAATTTACGGTCCAGAGAGTTCAGGTAAAACGACATTAACATTA
CAAGTAATTGCTGAAGCGCAAAAGCAAGGCAAAACCTGTGCATTTATCGATGCTGAGCACGCACTTGATCCATCTTACGC
AAGAAAATTAGGCGTAAATGTTGATGACCTATTAATCTCTCAACCAGATACCGGTGAGCAAGCGTTAGAAATCTGTGACA
TGTTAGTACGTTCGGGCGCTGTTGGCGTGGTGATTGTCGATTCGGTTGCGGCGTTAACACCAAAAGCTGAAATTGAAGGA
GACATGGGGGATTCTCACATGGGACTTCAAGCTCGTCTAATGTCGCAAGCATTACGTAAATTAACTGGTAACATTAAACA
AACTAATACGATGGTTATCTTTATTAACCAAATCCGTATGAAAATTGGCGTTATGTTTGGTAACCCTGAAACCACTACAG
GTGGTAATGCACTTAAATTCTATGCGTCAGTTCGTTTAGATATTCGTCGTATTGGTGCTGTTAAAAATGGTGATGAAATT
ACCGGTAATGAAACACGTGTTAAAGTGGTTAAAAACAAAGTATCACCGCCATTTAAACAAGCTGAATTCCAAATCTTGTA
CGGTCAAGGTATTAACAACTTGGGTGAATTAATCGACCTAGGTGTTAAGCAAGAGTTAGTTGAAAAATCAGGTTCTTGGT
ACGCTTACAACGGTAGCAAAATTGGTCAAGGTAAGACTAATGCTTGTAAATTCTTACAGGAAAACCCAGCGTTAGCTGAA
GAGCTAAATGGCAAGTTACGTGAGATTTTACTGGCTAAACCAGTACTAACACCAGAAACTCAAGAGCAAGACGGCCCAGC
ACCAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.354

93.983

0.736
  recA Vibrio cholerae strain A1552

78.354

93.983

0.736
  recA Pseudomonas stutzeri DSM 10701

76.261

96.562

0.736
  recA Acinetobacter baylyi ADP1

74.242

94.556

0.702
  recA Acinetobacter baumannii D1279779

74.39

93.983

0.699
  recA Glaesserella parasuis strain SC1401

74.085

93.983

0.696
  recA Neisseria gonorrhoeae MS11

69.143

100

0.693
  recA Neisseria gonorrhoeae MS11

69.143

100

0.693
  recA Neisseria gonorrhoeae strain FA1090

69.143

100

0.693
  recA Ralstonia pseudosolanacearum GMI1000

72.727

94.556

0.688
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.908

96.562

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

91.977

0.602
  recA Helicobacter pylori strain NCTC11637

61.062

97.135

0.593
  recA Helicobacter pylori 26695

61.062

97.135

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

63.58

92.837

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

61.774

93.696

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.467

96.848

0.576
  recA Streptococcus pneumoniae R6

59.939

93.696

0.562
  recA Streptococcus pneumoniae TIGR4

59.939

93.696

0.562
  recA Streptococcus pneumoniae Rx1

59.939

93.696

0.562
  recA Streptococcus pneumoniae D39

59.939

93.696

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.574

94.269

0.562
  recA Streptococcus mitis NCTC 12261

59.633

93.696

0.559
  recA Streptococcus mitis SK321

59.633

93.696

0.559
  recA Streptococcus mutans UA159

59.692

93.123

0.556
  recA Streptococcus pyogenes NZ131

59.385

93.123

0.553

Multiple sequence alignment