Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACA097_RS06300 Genome accession   NZ_CP166971
Coordinates   1322152..1323213 (-) Length   353 a.a.
NCBI ID   WP_043250048.1    Uniprot ID   A0A024HCV9
Organism   Pseudomonas sp. QL9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1317152..1328213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA097_RS06285 (ACA097_06280) - 1318728..1320131 (+) 1404 WP_371369170.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -
  ACA097_RS06290 (ACA097_06285) - 1320216..1321292 (+) 1077 WP_371369172.1 LOG family protein -
  ACA097_RS06295 (ACA097_06290) recX 1321682..1322143 (-) 462 WP_371369174.1 recombination regulator RecX -
  ACA097_RS06300 (ACA097_06295) recA 1322152..1323213 (-) 1062 WP_043250048.1 recombinase RecA Machinery gene
  ACA097_RS06305 (ACA097_06300) - 1323302..1323814 (-) 513 WP_043250046.1 CinA family protein -
  ACA097_RS06310 (ACA097_06305) mutS 1323898..1326471 (+) 2574 WP_201752544.1 DNA mismatch repair protein MutS -
  ACA097_RS06315 (ACA097_06310) fdxA 1326538..1326861 (+) 324 WP_043249946.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37715.08 Da        Isoelectric Point: 5.0393

>NTDB_id=1036465 ACA097_RS06300 WP_043250048.1 1322152..1323213(-) (recA) [Pseudomonas sp. QL9]
MDENKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKQGATCAFVDAEHALDPDYAAKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
QHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKSGAWYSYQGSKIGQGKANAAKYLEENSEVCAVLDK
TIREQLLSNQPAPTKAELAAAEAAEAAEADLDY

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1036465 ACA097_RS06300 WP_043250048.1 1322152..1323213(-) (recA) [Pseudomonas sp. QL9]
ATGGACGAGAACAAGAAGCGCGCCCTGGCTGCGGCCCTGGGACAGATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCATGAGCGCCAGGCCATTCCGGCCATCTCCACCGGCTCGCTGGGCCTGGACATTGCGCTGGGCATCGGCG
GTCTGCCGAAAGGCCGTATCGTCGAAATCTACGGCCCGGAATCCTCGGGTAAGACCACGCTGACCCTGTCTGTCATCGCC
GAAGCTCAGAAGCAGGGTGCCACCTGCGCCTTCGTCGACGCCGAGCACGCGCTTGACCCGGACTACGCCGCCAAGCTGGG
CGTCAATGTCGACGATCTGCTGGTCTCTCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAGATGGGCGAT
CAGCACGTTGGTCTGCAAGCCCGCCTGATGTCGCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACTCCTCGGTTCGCCTGGATATCCGTCGTACCGGCGCGGTGAAAGAAGGCGACGAGGTGGTCGGCAGCGAG
ACCCGCGTCAAGGTAGTGAAGAACAAGGTCGCTCCGCCGTTCCGTCAGGCCGAATTCCAGATTCTCTACGGTAAAGGCAT
CTACCGTACTGGCGAGATCATCGACCTGGGCGTACAGCTGGGCCTAGTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGACAGGGCAAGGCCAACGCCGCCAAGTACCTGGAAGAGAACTCCGAGGTCTGCGCCGTTCTGGACAAA
ACCATTCGCGAACAGCTGCTGAGCAATCAGCCTGCGCCGACCAAGGCCGAGCTGGCTGCGGCCGAAGCCGCCGAGGCTGC
TGAAGCCGATCTCGACTACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024HCV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.017

98.017

0.873
  recA Acinetobacter baylyi ADP1

72.206

98.867

0.714
  recA Vibrio cholerae strain A1552

73.607

96.601

0.711
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.607

96.601

0.711
  recA Acinetobacter baumannii D1279779

75.305

92.918

0.7
  recA Glaesserella parasuis strain SC1401

72.455

94.618

0.686
  recA Neisseria gonorrhoeae MS11

70.988

91.785

0.652
  recA Neisseria gonorrhoeae MS11

70.988

91.785

0.652
  recA Neisseria gonorrhoeae strain FA1090

70.988

91.785

0.652
  recA Ralstonia pseudosolanacearum GMI1000

73.633

88.102

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.635

0.598
  recA Helicobacter pylori strain NCTC11637

62.611

95.467

0.598
  recA Helicobacter pylori 26695

62.018

95.467

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.078

94.618

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

63.354

91.218

0.578
  recA Streptococcus mutans UA159

57.183

100

0.575
  recA Streptococcus pneumoniae R6

55.989

100

0.569
  recA Streptococcus pneumoniae D39

55.989

100

0.569
  recA Streptococcus pneumoniae Rx1

55.989

100

0.569
  recA Streptococcus pneumoniae TIGR4

55.989

100

0.569
  recA Streptococcus mitis NCTC 12261

56.534

99.717

0.564
  recA Streptococcus mitis SK321

59.509

92.351

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

62.179

88.385

0.55
  recA Streptococcus pyogenes NZ131

58.769

92.068

0.541
  recA Lactococcus lactis subsp. cremoris KW2

56.966

91.501

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.046

92.635

0.51

Multiple sequence alignment