Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ACBG82_RS13580 | Genome accession | NZ_CP166881 |
| Coordinates | 2926915..2927967 (-) | Length | 350 a.a. |
| NCBI ID | WP_005688187.1 | Uniprot ID | A0A5P5ZCT3 |
| Organism | Lacticaseibacillus rhamnosus strain YGRT11 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2888192..2937151 | 2926915..2927967 | within | 0 |
Gene organization within MGE regions
Location: 2888192..2937151
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACBG82_RS13415 (ACBG82_13415) | - | 2888575..2889114 (-) | 540 | WP_014569370.1 | HdeD family acid-resistance protein | - |
| ACBG82_RS13420 (ACBG82_13420) | uvrA | 2889316..2892210 (-) | 2895 | WP_014569369.1 | excinuclease ABC subunit UvrA | - |
| ACBG82_RS13425 (ACBG82_13425) | uvrB | 2892391..2894406 (-) | 2016 | WP_005688715.1 | excinuclease ABC subunit UvrB | - |
| ACBG82_RS13430 (ACBG82_13430) | - | 2894677..2895324 (-) | 648 | WP_014569368.1 | YfbR-like 5'-deoxynucleotidase | - |
| ACBG82_RS13435 (ACBG82_13435) | - | 2895784..2897511 (-) | 1728 | WP_014569367.1 | phospho-sugar mutase | - |
| ACBG82_RS13440 (ACBG82_13440) | trxB | 2897763..2898710 (-) | 948 | WP_005684511.1 | thioredoxin-disulfide reductase | - |
| ACBG82_RS13445 (ACBG82_13445) | - | 2898776..2899831 (-) | 1056 | WP_014569366.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| ACBG82_RS13450 (ACBG82_13450) | lgt | 2899842..2900669 (-) | 828 | WP_014569365.1 | prolipoprotein diacylglyceryl transferase | - |
| ACBG82_RS13455 (ACBG82_13455) | hprK | 2900671..2901630 (-) | 960 | WP_005684508.1 | HPr(Ser) kinase/phosphatase | - |
| ACBG82_RS13460 (ACBG82_13460) | - | 2901897..2902232 (-) | 336 | WP_005684507.1 | phage holin family protein | - |
| ACBG82_RS13465 (ACBG82_13465) | - | 2902235..2902495 (-) | 261 | WP_005688700.1 | hypothetical protein | - |
| ACBG82_RS13470 (ACBG82_13470) | liaX | 2902507..2903997 (-) | 1491 | WP_014569364.1 | daptomycin-sensing surface protein LiaX | - |
| ACBG82_RS13475 (ACBG82_13475) | - | 2904566..2905294 (+) | 729 | WP_014569363.1 | helix-turn-helix domain-containing protein | - |
| ACBG82_RS13480 (ACBG82_13480) | - | 2905291..2906169 (+) | 879 | WP_048653158.1 | IS3 family transposase | - |
| ACBG82_RS13485 (ACBG82_13485) | phoU | 2906423..2907100 (-) | 678 | WP_005684502.1 | phosphate signaling complex protein PhoU | - |
| ACBG82_RS13490 (ACBG82_13490) | pstB | 2907111..2907875 (-) | 765 | WP_005684501.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| ACBG82_RS13495 (ACBG82_13495) | pstB | 2907885..2908703 (-) | 819 | WP_005713669.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| ACBG82_RS13500 (ACBG82_13500) | pstA | 2908774..2909658 (-) | 885 | WP_005684499.1 | phosphate ABC transporter permease PstA | - |
| ACBG82_RS13505 (ACBG82_13505) | pstC | 2909655..2910578 (-) | 924 | WP_005684497.1 | phosphate ABC transporter permease subunit PstC | - |
| ACBG82_RS13510 (ACBG82_13510) | - | 2910726..2911592 (-) | 867 | WP_005684496.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| ACBG82_RS13515 (ACBG82_13515) | pnpS | 2911682..2913349 (-) | 1668 | WP_014569361.1 | two-component system histidine kinase PnpS | - |
| ACBG82_RS13520 (ACBG82_13520) | - | 2913342..2914046 (-) | 705 | WP_005688690.1 | response regulator transcription factor | - |
| ACBG82_RS13525 (ACBG82_13525) | - | 2914043..2915140 (-) | 1098 | WP_014569360.1 | PDZ domain-containing protein | - |
| ACBG82_RS13530 (ACBG82_13530) | - | 2915196..2915333 (-) | 138 | WP_014569359.1 | hypothetical protein | - |
| ACBG82_RS13535 (ACBG82_13535) | ftsX | 2915411..2916298 (-) | 888 | WP_005684490.1 | permease-like cell division protein FtsX | - |
| ACBG82_RS13540 (ACBG82_13540) | ftsE | 2916288..2916974 (-) | 687 | WP_005684489.1 | cell division ATP-binding protein FtsE | - |
| ACBG82_RS13550 (ACBG82_13550) | secA | 2918309..2920672 (-) | 2364 | WP_005684487.1 | preprotein translocase subunit SecA | - |
| ACBG82_RS13555 (ACBG82_13555) | hpf | 2921255..2921812 (-) | 558 | WP_005684485.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| ACBG82_RS13560 (ACBG82_13560) | - | 2922004..2922522 (-) | 519 | WP_005688681.1 | ComF family protein | - |
| ACBG82_RS13565 (ACBG82_13565) | - | 2922681..2923946 (-) | 1266 | WP_014569356.1 | DEAD/DEAH box helicase | - |
| ACBG82_RS13570 (ACBG82_13570) | - | 2923974..2924630 (+) | 657 | WP_029943817.1 | YigZ family protein | - |
| ACBG82_RS13575 (ACBG82_13575) | rny | 2924719..2926290 (-) | 1572 | WP_005684479.1 | ribonuclease Y | - |
| ACBG82_RS13580 (ACBG82_13580) | recA | 2926915..2927967 (-) | 1053 | WP_005688187.1 | recombinase RecA | Machinery gene |
| ACBG82_RS13585 (ACBG82_13585) | cinA | 2928019..2929260 (-) | 1242 | WP_014569352.1 | competence/damage-inducible protein A | Machinery gene |
| ACBG82_RS13590 (ACBG82_13590) | pgsA | 2929481..2930071 (-) | 591 | WP_014569351.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| ACBG82_RS13595 (ACBG82_13595) | - | 2930068..2931003 (-) | 936 | WP_005688668.1 | helix-turn-helix domain-containing protein | - |
| ACBG82_RS13600 (ACBG82_13600) | ymfI | 2931090..2931818 (-) | 729 | WP_014569350.1 | elongation factor P 5-aminopentanone reductase | - |
| ACBG82_RS13605 (ACBG82_13605) | yfmH | 2931818..2933110 (-) | 1293 | WP_014569349.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| ACBG82_RS13610 (ACBG82_13610) | yfmF | 2933107..2934369 (-) | 1263 | WP_014569348.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| ACBG82_RS13615 (ACBG82_13615) | - | 2934378..2936678 (-) | 2301 | WP_014569347.1 | DNA translocase FtsK | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37586.87 Da Isoelectric Point: 5.5040
>NTDB_id=1035945 ACBG82_RS13580 WP_005688187.1 2926915..2927967(-) (recA) [Lacticaseibacillus rhamnosus strain YGRT11]
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGN
RTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIE
KQVRLAYGMSPDHVIDQADIETDTTTSAAS
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGN
RTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIE
KQVRLAYGMSPDHVIDQADIETDTTTSAAS
Nucleotide
Download Length: 1053 bp
>NTDB_id=1035945 ACBG82_RS13580 WP_005688187.1 2926915..2927967(-) (recA) [Lacticaseibacillus rhamnosus strain YGRT11]
ATGGCAGAAACCGAACGACAGGAAGCATTGGCAACGGCGTTAAAGAAGATTGAGAAGAATTTTGGCAAAGGGGCCATTAT
GCGGATGGGGGACAAAGTGGAGACACGCGTTTCTGCTGTTTCCAGCGGATCACTTGCAATTGATGATGCACTTGGTGTTG
GTGGGCTGCCACGTGGACGAATTGTTGAAATCTATGGTCCGGAAAGTTCCGGGAAAACGACTGTGGCCTTGCATGCAGTT
GCCATGGTTCAGCAACACGGTGGCACGGCCGCTTATATTGATGCTGAAAATGCCATGGATCCCAAATATGCGGCGGCACT
TGGCGTCAATATTGATGAGCTGTTGCTTTCACAGCCGGATACCGGTGAACAAGGATTAGAAATTGCCGATGAGCTGGTTG
CATCGGGCGCCATTGATATTTTAGTGGTTGATTCAGTGGCAGCTCTGGTACCGCGCGCAGAAATTGAAGGGGACATGGGT
GATGCACACGTTGGGTTACAGGCACGGCTAATGTCACAGGCCTTACGAAAGTTGTCTGGGGCGATCAATAAGACCAAAAC
AATTGCCTTGTTCATTAACCAGATCCGGGAAAAAGTCGGCATTGTATTCGGCAATCCTGAAATTACGCCAGGTGGTCGGG
CGCTGAAATTTTATGCTACTGTGCGTATGGAAGTGCGCCGTTCCGAGCAGATCAAAAACGGTGCCGATATTATTGGCAAT
CGCACCAAAATCAAAGTGGTTAAAAATAAAGTTGCACCGCCGTTTAAGACTGCCATTGTTGATATTATGTATGGTCAAGG
CATTTCCCAAAGCGGTGAACTTGTCGACATGGCGGTTGAAAAAGACATCATTGAAAAGGCGGGTTCATGGTATGCCTACC
AAGGCGAGCGCATTGGTCAAGGACGTGAGCACGCTAAAAGCTATCTTGAAACGCATGAGGAGCTGCGCCGAACCATTGAA
AAACAAGTCCGGCTTGCTTATGGAATGTCGCCGGATCACGTTATCGATCAAGCAGACATAGAGACAGATACTACCACATC
TGCCGCATCATGA
ATGGCAGAAACCGAACGACAGGAAGCATTGGCAACGGCGTTAAAGAAGATTGAGAAGAATTTTGGCAAAGGGGCCATTAT
GCGGATGGGGGACAAAGTGGAGACACGCGTTTCTGCTGTTTCCAGCGGATCACTTGCAATTGATGATGCACTTGGTGTTG
GTGGGCTGCCACGTGGACGAATTGTTGAAATCTATGGTCCGGAAAGTTCCGGGAAAACGACTGTGGCCTTGCATGCAGTT
GCCATGGTTCAGCAACACGGTGGCACGGCCGCTTATATTGATGCTGAAAATGCCATGGATCCCAAATATGCGGCGGCACT
TGGCGTCAATATTGATGAGCTGTTGCTTTCACAGCCGGATACCGGTGAACAAGGATTAGAAATTGCCGATGAGCTGGTTG
CATCGGGCGCCATTGATATTTTAGTGGTTGATTCAGTGGCAGCTCTGGTACCGCGCGCAGAAATTGAAGGGGACATGGGT
GATGCACACGTTGGGTTACAGGCACGGCTAATGTCACAGGCCTTACGAAAGTTGTCTGGGGCGATCAATAAGACCAAAAC
AATTGCCTTGTTCATTAACCAGATCCGGGAAAAAGTCGGCATTGTATTCGGCAATCCTGAAATTACGCCAGGTGGTCGGG
CGCTGAAATTTTATGCTACTGTGCGTATGGAAGTGCGCCGTTCCGAGCAGATCAAAAACGGTGCCGATATTATTGGCAAT
CGCACCAAAATCAAAGTGGTTAAAAATAAAGTTGCACCGCCGTTTAAGACTGCCATTGTTGATATTATGTATGGTCAAGG
CATTTCCCAAAGCGGTGAACTTGTCGACATGGCGGTTGAAAAAGACATCATTGAAAAGGCGGGTTCATGGTATGCCTACC
AAGGCGAGCGCATTGGTCAAGGACGTGAGCACGCTAAAAGCTATCTTGAAACGCATGAGGAGCTGCGCCGAACCATTGAA
AAACAAGTCCGGCTTGCTTATGGAATGTCGCCGGATCACGTTATCGATCAAGCAGACATAGAGACAGATACTACCACATC
TGCCGCATCATGA
Similar proteins
Only experimentally validated proteins are listed.