Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACA027_RS21260 Genome accession   NZ_CP166730
Coordinates   4802641..4803765 (+) Length   374 a.a.
NCBI ID   WP_370680171.1    Uniprot ID   -
Organism   Comamonas sp. GB3 AK4-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4797641..4808765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA027_RS21240 (ACA027_21240) - 4798495..4799403 (+) 909 WP_370682650.1 LysR substrate-binding domain-containing protein -
  ACA027_RS21245 (ACA027_21245) - 4799500..4800951 (-) 1452 WP_370680168.1 sensor histidine kinase N-terminal domain-containing protein -
  ACA027_RS21250 (ACA027_21250) - 4801118..4801792 (-) 675 WP_370680169.1 response regulator -
  ACA027_RS21255 (ACA027_21255) - 4801988..4802491 (-) 504 WP_370680170.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACA027_RS21260 (ACA027_21260) recA 4802641..4803765 (+) 1125 WP_370680171.1 recombinase RecA Machinery gene
  ACA027_RS21265 (ACA027_21265) recX 4804000..4804458 (+) 459 WP_370680172.1 recombination regulator RecX -
  ACA027_RS21270 (ACA027_21270) - 4804766..4805608 (+) 843 WP_370680173.1 transporter substrate-binding domain-containing protein -
  ACA027_RS21275 (ACA027_21275) - 4806211..4806981 (+) 771 WP_370680174.1 SDR family oxidoreductase -
  ACA027_RS21280 (ACA027_21280) - 4807088..4807939 (+) 852 WP_370680175.1 fumarylacetoacetate hydrolase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39528.34 Da        Isoelectric Point: 5.3780

>NTDB_id=1035061 ACA027_RS21260 WP_370680171.1 4802641..4803765(+) (recA) [Comamonas sp. GB3 AK4-5]
MNATAAKTADANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAIQDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESS
GKTTLTLQVIAEMQKLSGTCAFIDAEHALDTGYAQKLGVNLSEVLISQPDTGEQALEICDSLVRSGAVDLIVIDSVAALT
PKAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGT
IKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGAGISREGEILDLGVNAKILEKSGAWYAYNGEKIGQGRDNSREFLR
ENPALAIEIENKVRDSLGITLIPVAAGEEAAKPTAKGKKGDKNAAIDEDGVIQA

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1035061 ACA027_RS21260 WP_370680171.1 4802641..4803765(+) (recA) [Comamonas sp. GB3 AK4-5]
ATGAACGCCACCGCCGCCAAGACCGCCGACGCCAACAGCGAAAAAGCCAAAGCCCTGGCCGCTGCCCTTGCCCAGATTGA
AAAGCAGTTCGGCAAAGGCACCATCATGAAGCTGGGTGAAGGCGAAGCCATCCAGGACATCCAGGTGGTGTCCACCGGTT
CGCTGGGCCTGGATATCGCCCTGGGCGTGGGCGGCCTGCCCCGTGGCCGCGTGATTGAAATCTACGGCCCGGAATCCTCC
GGCAAGACCACGCTGACCCTGCAGGTGATTGCCGAGATGCAAAAGCTGAGCGGCACCTGCGCCTTCATCGACGCCGAACA
CGCCCTGGACACCGGCTACGCCCAAAAGCTGGGCGTGAACCTGAGCGAGGTGCTGATCAGCCAGCCCGACACCGGCGAGC
AAGCCCTGGAGATCTGCGACAGTCTGGTGCGCTCCGGCGCTGTGGACCTGATCGTCATCGACTCGGTGGCCGCCCTGACC
CCCAAGGCCGAAATCGAAGGCGAAATGGGTGACCAACTGCCCGGCCTGCAGGCCCGCTTGATGAGCCAGGCATTGCGCAA
GCTGACCGCCACCATCAAGAAGACCAATTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GTTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTCGATATCCGCCGCACCGGCACC
ATCAAAAAGGGTGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTTCAAGAC
GGCCGAATTCGACATTCTGTTTGGCGCCGGCATCTCGCGCGAAGGCGAAATCCTGGACCTGGGCGTGAACGCAAAGATTC
TGGAAAAGTCCGGTGCCTGGTATGCCTACAACGGCGAAAAAATCGGCCAGGGCCGCGACAACTCGCGTGAATTCCTACGC
GAAAACCCGGCACTGGCCATCGAAATCGAAAACAAGGTGCGCGACAGCCTGGGCATCACCCTGATCCCCGTGGCCGCCGG
CGAAGAAGCCGCCAAGCCCACCGCCAAAGGCAAAAAGGGCGACAAGAACGCTGCCATCGACGAAGACGGTGTGATTCAAG
CCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.635

89.305

0.738
  recA Glaesserella parasuis strain SC1401

69.94

89.84

0.628
  recA Pseudomonas stutzeri DSM 10701

70.821

87.968

0.623
  recA Neisseria gonorrhoeae strain FA1090

70

88.235

0.618
  recA Neisseria gonorrhoeae MS11

70

88.235

0.618
  recA Neisseria gonorrhoeae MS11

70

88.235

0.618
  recA Vibrio cholerae strain A1552

69.632

87.166

0.607
  recA Acinetobacter baylyi ADP1

69.632

87.166

0.607
  recA Acinetobacter baumannii D1279779

69.632

87.166

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.632

87.166

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

89.84

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.261

87.968

0.583
  recA Helicobacter pylori 26695

63.72

87.701

0.559
  recA Helicobacter pylori strain NCTC11637

63.72

87.701

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

87.433

0.559
  recA Streptococcus mitis SK321

57.939

95.989

0.556
  recA Streptococcus pneumoniae TIGR4

57.3

97.059

0.556
  recA Streptococcus pneumoniae R6

57.3

97.059

0.556
  recA Streptococcus pneumoniae Rx1

57.3

97.059

0.556
  recA Streptococcus pneumoniae D39

57.3

97.059

0.556
  recA Streptococcus mutans UA159

56.593

97.326

0.551
  recA Lactococcus lactis subsp. cremoris KW2

61.012

89.84

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

60.961

89.037

0.543
  recA Streptococcus pyogenes NZ131

61.398

87.968

0.54
  recA Streptococcus mitis NCTC 12261

60.121

88.503

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

85.829

0.524

Multiple sequence alignment