Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB8599_RS12885 Genome accession   NZ_CP166194
Coordinates   2911987..2913033 (-) Length   348 a.a.
NCBI ID   WP_407331298.1    Uniprot ID   -
Organism   Enterovibrio sp. 27052020O     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2906987..2918033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8599_RS12870 (AB8599_12875) csrA 2908121..2908318 (-) 198 WP_016960259.1 carbon storage regulator CsrA -
  AB8599_RS12875 (AB8599_12880) alaS 2908800..2911382 (-) 2583 WP_407331296.1 alanine--tRNA ligase -
  AB8599_RS12880 (AB8599_12885) - 2911538..2911957 (-) 420 WP_407331297.1 regulatory protein RecX -
  AB8599_RS12885 (AB8599_12890) recA 2911987..2913033 (-) 1047 WP_407331298.1 recombinase RecA Machinery gene
  AB8599_RS12890 (AB8599_12895) pncC 2913157..2913645 (-) 489 WP_407331299.1 nicotinamide-nucleotide amidase -
  AB8599_RS12895 (AB8599_12900) mutS 2913806..2916340 (+) 2535 WP_407333223.1 DNA mismatch repair protein MutS -
  AB8599_RS12900 (AB8599_12905) rpoS 2916441..2917427 (-) 987 WP_407331300.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37582.01 Da        Isoelectric Point: 5.3276

>NTDB_id=1033636 AB8599_RS12885 WP_407331298.1 2911987..2913033(-) (recA) [Enterovibrio sp. 27052020O]
MDDNKQKALAAALGQIEKQFGKGSIMRLGDDRTMDIDTVSTGSLSLDIALGAGGLPFGRIVEIYGPESSGKTTLTLQVVA
EAQKIGKTCAFIDAEHALDPVYAGKLGVDIDNLLVSQPDTGEQALEIADALTRSGAVDVIIIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTANIKNSNTLMIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGDEIVGND
TRVKVVKNKIAAPFKQAEFQIMYGEGINLYGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKSNSCKYLKENPHLAQELDK
KLRDMLLGGGKEESAKKEDDKQPEGEAF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1033636 AB8599_RS12885 WP_407331298.1 2911987..2913033(-) (recA) [Enterovibrio sp. 27052020O]
ATGGACGACAACAAACAGAAGGCGTTAGCCGCGGCCCTGGGCCAGATCGAGAAACAATTTGGTAAAGGATCGATCATGCG
TCTAGGCGACGATCGCACCATGGATATTGATACCGTATCAACCGGGTCATTGTCACTGGATATCGCGCTGGGAGCGGGTG
GCTTGCCGTTCGGTCGTATTGTTGAAATCTACGGTCCTGAATCTTCAGGTAAAACAACGTTAACGCTGCAAGTCGTGGCG
GAAGCGCAGAAAATTGGCAAGACTTGTGCGTTTATCGATGCGGAACACGCACTTGACCCAGTTTATGCGGGCAAGTTAGG
TGTTGATATCGACAACCTATTGGTTTCACAGCCAGATACCGGTGAGCAGGCGCTGGAAATTGCGGATGCATTGACTCGCT
CAGGCGCTGTTGACGTTATCATCATTGACTCCGTTGCTGCATTGACACCTAAAGCTGAAATCGAAGGCGAAATGGGTGAT
TCTCACATGGGTCTGCAAGCGCGTATGCTTTCTCAAGCTATGCGTAAGCTGACTGCCAACATCAAGAACAGCAACACCTT
GATGATTTTCATCAACCAAATCCGTATGAAAATTGGTGTGATGTTTGGTAATCCAGAAACCACTACTGGTGGTAACGCAC
TGAAGTTTTATGCATCTGTTCGTCTTGATATTCGCCGCATTGGTTCTATCAAAGAAGGCGACGAGATTGTTGGTAACGAC
ACCCGCGTAAAAGTCGTGAAGAACAAGATTGCAGCACCGTTTAAACAAGCTGAATTCCAAATCATGTACGGCGAAGGTAT
CAACCTTTATGGCGAACTCATCGACTTGGGCGTTAAGCACAAGCTGGTTGAGAAAGCTGGCGCTTGGTACAGCTATAACG
GTGACAAGATTGGTCAAGGTAAGTCGAATTCTTGTAAATACCTGAAAGAGAACCCACACCTTGCTCAAGAGTTAGACAAA
AAACTGCGCGATATGTTGTTGGGCGGTGGTAAAGAAGAAAGCGCAAAAAAAGAAGATGATAAACAGCCAGAAGGCGAAGC
GTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.015

93.966

0.799
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.015

93.966

0.799
  recA Pseudomonas stutzeri DSM 10701

75.229

93.966

0.707
  recA Acinetobacter baumannii D1279779

71.221

98.851

0.704
  recA Acinetobacter baylyi ADP1

71.014

99.138

0.704
  recA Glaesserella parasuis strain SC1401

72.531

93.103

0.675
  recA Ralstonia pseudosolanacearum GMI1000

73.312

89.368

0.655
  recA Neisseria gonorrhoeae MS11

69.018

93.678

0.647
  recA Neisseria gonorrhoeae MS11

69.018

93.678

0.647
  recA Neisseria gonorrhoeae strain FA1090

69.018

93.678

0.647
  recA Helicobacter pylori 26695

60.519

99.713

0.603
  recA Helicobacter pylori strain NCTC11637

60.231

99.713

0.601
  recA Streptococcus pneumoniae D39

60.58

99.138

0.601
  recA Streptococcus pneumoniae TIGR4

60.58

99.138

0.601
  recA Streptococcus pneumoniae R6

60.58

99.138

0.601
  recA Streptococcus pneumoniae Rx1

60.58

99.138

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Streptococcus mitis SK321

60.411

97.989

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.115

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.241

0.58
  recA Streptococcus mitis NCTC 12261

62.229

92.816

0.578
  recA Streptococcus pyogenes NZ131

61.846

93.391

0.578
  recA Streptococcus mutans UA159

61.231

93.391

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.991

92.816

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

61.371

92.241

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.429

93.678

0.566

Multiple sequence alignment