Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB8808_RS05215 Genome accession   NZ_CP166101
Coordinates   1322815..1323855 (-) Length   346 a.a.
NCBI ID   WP_036140566.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 2632     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1317815..1328855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8808_RS05200 (AB8808_05200) csrA 1319105..1319314 (-) 210 WP_354514968.1 carbon storage regulator CsrA -
  AB8808_RS05205 (AB8808_05205) alaS 1319618..1322251 (-) 2634 WP_369930437.1 alanine--tRNA ligase -
  AB8808_RS05210 (AB8808_05210) - 1322322..1322828 (-) 507 WP_369930438.1 regulatory protein RecX -
  AB8808_RS05215 (AB8808_05215) recA 1322815..1323855 (-) 1041 WP_036140566.1 recombinase RecA Machinery gene
  AB8808_RS05220 (AB8808_05220) - 1323953..1324426 (-) 474 WP_369931267.1 CinA family protein -
  AB8808_RS05225 (AB8808_05225) - 1324716..1325471 (+) 756 WP_369930439.1 hypothetical protein -
  AB8808_RS05230 (AB8808_05230) - 1325479..1326687 (+) 1209 WP_369930440.1 peptidoglycan-binding protein -
  AB8808_RS05235 (AB8808_05235) - 1326708..1327250 (+) 543 WP_369930441.1 hypothetical protein -
  AB8808_RS05240 (AB8808_05240) - 1328030..1328488 (+) 459 WP_354514979.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37154.33 Da        Isoelectric Point: 5.1979

>NTDB_id=1033410 AB8808_RS05215 WP_036140566.1 1322815..1323855(-) (recA) [Xanthomonas sp. NCPPB 2632]
MDDNKRKALASALGQIEKQFGKGAVMRLGDRVDDNIDTVSTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLTLQAIA
SCQRAGGTAAFVDAEHALDPSYAEKLGVNVADLLVSQPDTGEQALEIADMLVRSGAVDMVVIDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGDEVIGSE
TRVKVVKNKVAPPFRQAEFEILYGEGTSREGEIIELGVRENLIDKSGAWYSYKGDRIGQGKENVRQFLRDNPGIANEVDT
ELRARLLVKAGPKSEASTEADELEEV

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1033410 AB8808_RS05215 WP_036140566.1 1322815..1323855(-) (recA) [Xanthomonas sp. NCPPB 2632]
ATGGACGACAATAAGCGCAAGGCGCTGGCGAGTGCCCTCGGCCAGATCGAAAAGCAGTTCGGCAAGGGTGCGGTCATGCG
TCTTGGTGACCGCGTCGACGACAACATCGACACGGTGTCCACCGGCTCGCTGGGCCTGGATATCGCCCTGGGCATCGGCG
GCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCGGAATCCTCGGGTAAGACCACCCTGACCCTGCAGGCCATTGCC
TCGTGCCAGCGCGCTGGCGGCACGGCGGCCTTCGTCGACGCCGAGCACGCGCTCGACCCGAGCTACGCCGAAAAACTGGG
CGTCAACGTCGCCGACCTCCTGGTCAGCCAGCCGGACACCGGCGAGCAGGCCCTCGAGATCGCCGACATGCTGGTGCGCT
CGGGCGCCGTGGACATGGTGGTGATCGACTCGGTGGCCGCGCTGACCCCCAAGGCGGAAATCGAAGGCGAGATGGGCGAC
TCCCACGTCGGCCTGCACGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTCACGGCCAACATCAAGAAGACCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACGCCTCGGTCCGCCTGGATATCCGCCGCATTGGCGCGGTGAAGAAGGGCGACGAGGTCATCGGTTCGGAG
ACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCCGTCAGGCCGAGTTCGAGATCCTCTACGGCGAGGGCAC
CTCGCGCGAAGGCGAGATCATCGAACTGGGCGTGCGCGAGAACCTGATCGACAAATCCGGCGCCTGGTACAGCTACAAGG
GCGACCGCATCGGCCAGGGCAAGGAAAACGTCCGTCAGTTCCTGCGTGACAACCCGGGCATCGCCAACGAGGTCGATACC
GAGCTGCGCGCCCGCCTGCTGGTCAAGGCGGGTCCCAAGTCCGAAGCCTCCACCGAGGCCGACGAGCTTGAGGAAGTCTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.012

100

0.76
  recA Ralstonia pseudosolanacearum GMI1000

71.186

100

0.728
  recA Acinetobacter baylyi ADP1

72.807

98.844

0.72
  recA Neisseria gonorrhoeae strain FA1090

73.846

93.931

0.694
  recA Neisseria gonorrhoeae MS11

73.846

93.931

0.694
  recA Neisseria gonorrhoeae MS11

73.846

93.931

0.694
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.364

100

0.694
  recA Vibrio cholerae strain A1552

69.364

100

0.694
  recA Acinetobacter baumannii D1279779

72.783

94.509

0.688
  recA Glaesserella parasuis strain SC1401

68.713

98.844

0.679
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.569

96.532

0.633
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.712

92.197

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

65.938

92.486

0.61
  recA Helicobacter pylori strain NCTC11637

63.58

93.642

0.595
  recA Helicobacter pylori 26695

63.272

93.642

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

60.294

98.266

0.592
  recA Streptococcus mitis SK321

58.382

100

0.584
  recA Streptococcus mutans UA159

61.774

94.509

0.584
  recA Streptococcus pneumoniae Rx1

59.412

98.266

0.584
  recA Streptococcus pneumoniae D39

59.412

98.266

0.584
  recA Streptococcus pneumoniae R6

59.412

98.266

0.584
  recA Streptococcus pneumoniae TIGR4

59.412

98.266

0.584
  recA Streptococcus pyogenes NZ131

61.28

94.798

0.581
  recA Streptococcus mitis NCTC 12261

60.736

94.22

0.572
  recA Lactococcus lactis subsp. cremoris KW2

59.938

93.064

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.182

95.376

0.555

Multiple sequence alignment