Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB8W29_RS16310 Genome accession   NZ_CP166016
Coordinates   3301606..3302670 (+) Length   354 a.a.
NCBI ID   WP_007663473.1    Uniprot ID   K8A8X2
Organism   Cronobacter condimenti strain LMG26250     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3296606..3307670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8W29_RS16280 (AB8W29_16310) - 3296982..3297194 (-) 213 WP_032983867.1 KTSC domain-containing protein -
  AB8W29_RS16285 (AB8W29_16315) - 3297368..3298135 (+) 768 WP_007663481.1 basic amino acid ABC transporter substrate-binding protein -
  AB8W29_RS16290 (AB8W29_16320) - 3298207..3298971 (+) 765 WP_007663479.1 amino acid ABC transporter permease -
  AB8W29_RS16295 (AB8W29_16325) - 3298958..3299680 (+) 723 WP_007663476.1 amino acid ABC transporter ATP-binding protein -
  AB8W29_RS16300 (AB8W29_16330) mltB 3299795..3300877 (+) 1083 WP_007663475.1 lytic murein transglycosylase B -
  AB8W29_RS16305 (AB8W29_16335) pncC 3301020..3301517 (+) 498 WP_007663474.1 nicotinamide-nucleotide amidase -
  AB8W29_RS16310 (AB8W29_16340) recA 3301606..3302670 (+) 1065 WP_007663473.1 recombinase RecA Machinery gene
  AB8W29_RS16315 (AB8W29_16345) recX 3302728..3303225 (+) 498 WP_032983878.1 recombination regulator RecX -
  AB8W29_RS16320 (AB8W29_16350) alaS 3303361..3305988 (+) 2628 WP_007663471.1 alanine--tRNA ligase -
  AB8W29_RS16325 (AB8W29_16355) csrA 3306234..3306419 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38204.58 Da        Isoelectric Point: 4.7525

>NTDB_id=1033011 AB8W29_RS16310 WP_007663473.1 3301606..3302670(+) (recA) [Cronobacter condimenti strain LMG26250]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEDVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANATNFLKENKPMADEI
EKKLREMLLNNQDATPDFTVDNNDDGVEETNEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1033011 AB8W29_RS16310 WP_007663473.1 3301606..3302670(+) (recA) [Cronobacter condimenti strain LMG26250]
ATGGCTATCGACGAAAACAAGCAGAAGGCGTTGGCGGCAGCACTCGGCCAGATTGAAAAGCAATTCGGCAAAGGCTCCAT
CATGCGTCTGGGTGAAGATCGCACCATGGATGTGGAAACGATCTCCACCGGCTCTCTCTCCCTGGACATTGCGCTGGGTG
CGGGCGGTCTGCCAATGGGTCGTATCGTAGAAATCTACGGCCCGGAATCTTCAGGTAAAACCACGCTGACGCTGCAGGTC
ATTGCCGCTGCACAGCGCGCCGGTAAAACCTGTGCGTTTATCGACGCAGAGCATGCGCTTGATCCGGTTTATGCCCGTAA
GCTTGGCGTAGACATCGACAACCTGCTCTGTTCTCAGCCGGATACCGGCGAGCAAGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCCGGCGCAGTTGACGTACTGGTGGTCGACTCCGTAGCGGCGTTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCATATGGGCCTTGCAGCACGTATGATGAGCCAGGCGATGCGTAAGCTCGCAGGTAACCTGAAAAACTCCAA
CACCCTGCTTATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCGGAAACCACCACTGGTGGTA
ACGCGCTGAAATTCTACGCTTCCGTGCGTCTCGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGAAGACGTAGTCGGT
AGCGAAACCCGCGTCAAAGTGGTGAAAAATAAAGTTGCTGCGCCGTTTAAACAAGCTGAATTCCAGATCCTCTACGGGGA
AGGTATTAACTTCTACGGCGAACTGGTTGACCTCGGCGTGAAGCACAAGCTCATTGAAAAAGCGGGTGCATGGTATAGCT
ACAACGGCGAGAAAATCGGCCAGGGTAAAGCGAACGCAACTAACTTCCTCAAAGAGAACAAGCCGATGGCTGACGAAATT
GAGAAGAAACTGCGCGAGATGCTGCTCAATAATCAGGATGCTACGCCTGACTTCACCGTCGACAATAATGACGACGGCGT
TGAAGAAACTAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K8A8X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.503

0.785
  recA Vibrio cholerae strain A1552

83.988

93.503

0.785
  recA Pseudomonas stutzeri DSM 10701

74.184

95.198

0.706
  recA Acinetobacter baylyi ADP1

71.594

97.458

0.698
  recA Glaesserella parasuis strain SC1401

69.516

99.153

0.689
  recA Acinetobacter baumannii D1279779

74.312

92.373

0.686
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Helicobacter pylori strain NCTC11637

62.315

95.198

0.593
  recA Streptococcus pneumoniae Rx1

59.155

100

0.593
  recA Streptococcus pneumoniae TIGR4

59.155

100

0.593
  recA Streptococcus pneumoniae R6

59.155

100

0.593
  recA Streptococcus pneumoniae D39

59.155

100

0.593
  recA Helicobacter pylori 26695

62.018

95.198

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

61.834

95.48

0.59
  recA Streptococcus mutans UA159

62.769

91.808

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

62.462

91.808

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.525

0.573
  recA Streptococcus mitis NCTC 12261

62.539

91.243

0.571
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus mitis SK321

62.229

91.243

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.785

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

90.678

0.559

Multiple sequence alignment