Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QUE35_RS13005 Genome accession   NZ_AP028032
Coordinates   3281345..3282385 (+) Length   346 a.a.
NCBI ID   WP_009317555.1    Uniprot ID   A0A495VSD9
Organism   Coprobacter fastidiosus strain JCM 33896     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3276345..3287385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE35_RS12985 (Cfast33896_25330) - 3277255..3278172 (+) 918 WP_022599657.1 CDP-alcohol phosphatidyltransferase family protein -
  QUE35_RS12990 (Cfast33896_25340) - 3278366..3279562 (+) 1197 WP_009317558.1 saccharopine dehydrogenase family protein -
  QUE35_RS12995 (Cfast33896_25350) - 3279703..3280602 (-) 900 WP_022599662.1 glycerophosphodiester phosphodiesterase family protein -
  QUE35_RS13000 (Cfast33896_25360) bcp 3280877..3281332 (+) 456 WP_009317556.1 thioredoxin-dependent thiol peroxidase -
  QUE35_RS13005 (Cfast33896_25370) recA 3281345..3282385 (+) 1041 WP_009317555.1 recombinase RecA Machinery gene
  QUE35_RS13010 (Cfast33896_25380) - 3282570..3283130 (-) 561 WP_022599663.1 hypothetical protein -
  QUE35_RS13015 (Cfast33896_25390) lpxA 3283357..3284133 (-) 777 WP_009317553.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  QUE35_RS13020 (Cfast33896_25400) - 3284145..3285527 (-) 1383 WP_022599664.1 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase -
  QUE35_RS13025 (Cfast33896_25410) lpxD 3285568..3286608 (-) 1041 WP_022599665.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37373.96 Da        Isoelectric Point: 5.5888

>NTDB_id=103259 QUE35_RS13005 WP_009317555.1 3281345..3282385(+) (recA) [Coprobacter fastidiosus strain JCM 33896]
MENTEEKKAPMGKIPVPSEKLKALQAAMDKIEKNYGKGAIMKMGDDHIDEIAVIPTGSIGLNAALGVGGFPRGRVIEIYG
PESSGKTTLAIHAIAEAQKAGGIAAIIDAEHAFDRFYAEKLGVDVENLWISQPDSGEQALEIAEQLIRSSAVDIVVIDSV
AALTPKAELEGDMGESKMGLQARLMSQALRKLTATISKTNTTCIFINQLRDKLGVMFGNPETTTGGNALKFYASVRLDIR
RVSQIKDGDEVIGNQTRVKVVKNKVAPPFRKAEFDIMFGEGISRAGEIIDLGVEKGIIKKSGSWFSYDDTKLGQGRDAAK
KCIQDNPELAEELEAKIMEALRPATK

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=103259 QUE35_RS13005 WP_009317555.1 3281345..3282385(+) (recA) [Coprobacter fastidiosus strain JCM 33896]
ATGGAGAATACAGAAGAAAAAAAAGCTCCGATGGGTAAAATTCCTGTTCCGAGTGAAAAATTGAAGGCTTTGCAGGCCGC
TATGGATAAAATAGAAAAAAATTATGGCAAGGGTGCAATTATGAAGATGGGGGATGACCATATCGATGAGATTGCCGTAA
TTCCTACAGGTTCTATTGGTTTGAATGCCGCTTTAGGTGTCGGAGGTTTTCCACGAGGCCGTGTGATCGAGATTTATGGT
CCGGAATCTTCTGGTAAAACGACATTGGCGATTCATGCTATTGCCGAAGCTCAGAAAGCCGGAGGCATTGCGGCAATTAT
AGATGCAGAACATGCTTTTGACCGTTTTTATGCAGAAAAATTAGGGGTCGATGTAGAGAACTTATGGATATCTCAACCGG
ATAGCGGAGAACAGGCTTTGGAGATTGCAGAGCAACTGATACGCTCTTCTGCCGTAGATATTGTTGTTATCGATTCAGTT
GCAGCGTTGACTCCTAAGGCTGAGTTAGAAGGAGATATGGGAGAATCTAAAATGGGATTACAGGCACGTCTTATGTCTCA
GGCTTTGCGTAAATTGACGGCTACAATAAGTAAGACAAATACTACTTGCATATTTATCAATCAGTTGCGTGACAAATTAG
GCGTAATGTTCGGTAATCCGGAAACAACGACAGGGGGGAATGCATTAAAGTTTTATGCATCTGTTCGATTGGATATACGT
CGTGTCAGCCAGATTAAAGATGGGGACGAAGTGATCGGTAATCAGACAAGGGTAAAAGTTGTGAAGAATAAGGTTGCTCC
TCCTTTCCGTAAAGCCGAGTTCGATATTATGTTCGGAGAAGGTATTTCTCGTGCAGGAGAGATCATTGATTTGGGAGTGG
AAAAAGGTATAATCAAAAAGAGCGGCTCTTGGTTTAGCTATGATGATACAAAACTCGGACAAGGTAGGGATGCTGCAAAG
AAATGTATTCAGGATAATCCGGAGTTGGCAGAAGAATTGGAAGCTAAGATCATGGAAGCTTTACGGCCTGCAACTAAGTA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A495VSD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.121

95.376

0.688
  recA Neisseria gonorrhoeae MS11

66.25

92.486

0.613
  recA Neisseria gonorrhoeae MS11

66.25

92.486

0.613
  recA Neisseria gonorrhoeae strain FA1090

66.25

92.486

0.613
  recA Ralstonia pseudosolanacearum GMI1000

67.524

89.884

0.607
  recA Glaesserella parasuis strain SC1401

64.615

93.931

0.607
  recA Bacillus subtilis subsp. subtilis str. 168

63.975

93.064

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.467

93.353

0.592
  recA Helicobacter pylori 26695

61.702

95.087

0.587
  recA Helicobacter pylori strain NCTC11637

61.702

95.087

0.587
  recA Pseudomonas stutzeri DSM 10701

62.422

93.064

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.87

93.064

0.566
  recA Acinetobacter baylyi ADP1

60.87

93.064

0.566
  recA Vibrio cholerae strain A1552

60.87

93.064

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

93.064

0.564
  recA Streptococcus mitis SK321

59.877

93.642

0.561
  recA Streptococcus mitis NCTC 12261

59.877

93.642

0.561
  recA Streptococcus pyogenes NZ131

60.062

93.353

0.561
  recA Acinetobacter baumannii D1279779

60.248

93.064

0.561
  recA Streptococcus pneumoniae Rx1

59.568

93.642

0.558
  recA Streptococcus pneumoniae D39

59.568

93.642

0.558
  recA Streptococcus pneumoniae R6

59.568

93.642

0.558
  recA Streptococcus pneumoniae TIGR4

59.568

93.642

0.558
  recA Lactococcus lactis subsp. cremoris KW2

58.41

94.509

0.552
  recA Streptococcus mutans UA159

59.133

93.353

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.231

93.931

0.538

Multiple sequence alignment