Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB6N02_RS00835 Genome accession   NZ_CP163510
Coordinates   162194..163258 (-) Length   354 a.a.
NCBI ID   WP_043154135.1    Uniprot ID   A0A0L8R7C9
Organism   Aeromonas caviae strain 103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 157194..168258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N02_RS00815 (AB6N02_00815) csrA 157196..157384 (-) 189 WP_005315760.1 carbon storage regulator CsrA -
  AB6N02_RS00820 (AB6N02_00820) - 157478..158725 (-) 1248 WP_010672822.1 aspartate kinase -
  AB6N02_RS00825 (AB6N02_00825) alaS 158742..161366 (-) 2625 WP_041212325.1 alanine--tRNA ligase -
  AB6N02_RS00830 (AB6N02_00830) - 161646..162152 (-) 507 WP_052815401.1 regulatory protein RecX -
  AB6N02_RS00835 (AB6N02_00835) recA 162194..163258 (-) 1065 WP_043154135.1 recombinase RecA Machinery gene
  AB6N02_RS00840 (AB6N02_00840) pncC 163339..163830 (-) 492 WP_029313644.1 nicotinamide-nucleotide amidase -
  AB6N02_RS00845 (AB6N02_00845) - 164030..164437 (+) 408 WP_052815400.1 Spy/CpxP family protein refolding chaperone -
  AB6N02_RS00850 (AB6N02_00850) mutS 164701..167271 (+) 2571 WP_039040927.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38026.67 Da        Isoelectric Point: 4.9781

>NTDB_id=1030208 AB6N02_RS00835 WP_043154135.1 162194..163258(-) (recA) [Aeromonas caviae strain 103]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFSENKALAAEVEV
KLRELLLSGAAPVEEKATAAEYAEFEAENEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1030208 AB6N02_RS00835 WP_043154135.1 162194..163258(-) (recA) [Aeromonas caviae strain 103]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGCCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCCCTCTCTCTGGACGTGGCGCTGGGGATCGGTG
GTCTGCCGTGCGGTCGTATCGTCGAGATCTACGGTCCGGAATCGTCCGGTAAAACTACGCTGACCCTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCACTGGATCCTATCTATGCCGCCAAGCTGGG
CGTCAACGTCGACGACCTGCTCATCTCCCAGCCGGATACCGGTGAACAGGCACTGGAGATTTGCGACATGCTGGTGCGCT
CCAATGCCGTCGACGTCATCATCGTCGACTCCGTGGCGGCCTTGACCCCGAAAGCGGAAATCGAAGGGGAGATGGGTGAC
TCCCACGTCGGCCTGCAGGCTCGTCTGATGTCGCAGGCGCTGCGTAAATTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGTGTCATGTTCGGCAGCCCGGAGACCACCACCGGTGGTAACGCTT
TGAAGTTCTACGCTTCCGTGCGCCTGGACATCCGTCGTACCGGCGCCATCAAGGAGGGTGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAGGTAGTGAAGAACAAGGTGGCGCCACCCTTCAAGCAGGCTGAATTCCAGATCTTCTATGGTGCCGGCAT
CTCCAAGGAGGGCGAGCTGGTGGACCTGGGCGTCAAGCACAAGCTGATCGACAAGGCGGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGCCAGGGTAAAGCCAACGTGATGAAGCTCTTCTCCGAAAACAAGGCACTGGCTGCCGAGGTGGAAGTG
AAGCTGCGCGAGCTGCTGCTCTCCGGCGCCGCGCCGGTGGAGGAGAAGGCCACGGCTGCCGAATACGCCGAGTTTGAAGC
CGAAAACGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8R7C9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

75.637

99.718

0.754
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.637

99.718

0.754
  recA Pseudomonas stutzeri DSM 10701

77.035

97.175

0.749
  recA Acinetobacter baumannii D1279779

72.647

96.045

0.698
  recA Glaesserella parasuis strain SC1401

72.271

95.763

0.692
  recA Acinetobacter baylyi ADP1

73.112

93.503

0.684
  recA Ralstonia pseudosolanacearum GMI1000

72.948

92.938

0.678
  recA Neisseria gonorrhoeae MS11

72.086

92.09

0.664
  recA Neisseria gonorrhoeae MS11

72.086

92.09

0.664
  recA Neisseria gonorrhoeae strain FA1090

72.086

92.09

0.664
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

93.785

0.605
  recA Helicobacter pylori strain NCTC11637

64.308

91.808

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.113

0.59
  recA Helicobacter pylori 26695

63.692

91.808

0.585
  recA Streptococcus mitis SK321

58.357

99.718

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.069

90.113

0.559
  recA Streptococcus pneumoniae TIGR4

61.3

91.243

0.559
  recA Streptococcus pneumoniae Rx1

61.3

91.243

0.559
  recA Streptococcus pneumoniae D39

61.3

91.243

0.559
  recA Streptococcus pneumoniae R6

61.3

91.243

0.559
  recA Streptococcus mitis NCTC 12261

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.681

91.243

0.554
  recA Streptococcus mutans UA159

60.372

91.243

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

92.655

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.243

0.531

Multiple sequence alignment