Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB6B37_RS09455 Genome accession   NZ_CP163423
Coordinates   2033045..2034145 (-) Length   366 a.a.
NCBI ID   WP_371395527.1    Uniprot ID   -
Organism   Fretibacter rubidus strain JCM 15585     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2028045..2039145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6B37_RS09435 (AB6B37_09435) - 2028684..2029346 (+) 663 WP_371395523.1 hypothetical protein -
  AB6B37_RS09440 (AB6B37_09440) alaS 2029553..2032198 (+) 2646 WP_371395524.1 alanine--tRNA ligase -
  AB6B37_RS09445 (AB6B37_09445) - 2032203..2032565 (+) 363 WP_371395525.1 VOC family protein -
  AB6B37_RS09450 (AB6B37_09450) - 2032575..2032877 (-) 303 WP_371395526.1 hypothetical protein -
  AB6B37_RS09455 (AB6B37_09455) recA 2033045..2034145 (-) 1101 WP_371395527.1 recombinase RecA Machinery gene
  AB6B37_RS09460 (AB6B37_09460) - 2034292..2036967 (-) 2676 WP_371395528.1 ATP-binding protein -
  AB6B37_RS09465 (AB6B37_09465) - 2037113..2038948 (+) 1836 WP_371395529.1 DUF885 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38994.74 Da        Isoelectric Point: 5.0540

>NTDB_id=1029625 AB6B37_RS09455 WP_371395527.1 2033045..2034145(-) (recA) [Fretibacter rubidus strain JCM 15585]
MARNSTPLTVVGKASDKNKSAALEAALGQIDRAFGKGSVMKLGDKSAMDIASVSTGSIGLDIALGIGGLPRGRVIEIYGP
ESSGKTTLSLHCVAEIQKEGGVAAFIDAEHALDPTYAAKLGVDVNELLIAQPDTGEQGLEIADTLVRSGAIDVLVIDSVA
ALTPRAELEGDMGDSLPGLQARLMSQALRKLTGSISKSGCMVIFINQIRMKIGVMYGSPETTTGGNALKFYSSVRLDIRR
IGAIKHRDEVVGNQTRVKVVKNKVAPPFRQVEFDIMYGEGISKTGEIIDMGVMAGVIEKSGSWYSYGEERIGQGRENVRQ
FLIANPDIADAVELKIRQEKGLIADELLVPKEEQNDDITDIPAIKA

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1029625 AB6B37_RS09455 WP_371395527.1 2033045..2034145(-) (recA) [Fretibacter rubidus strain JCM 15585]
ATGGCCAGAAACTCAACACCATTAACTGTCGTGGGTAAAGCTTCCGATAAAAATAAATCTGCTGCGCTAGAGGCAGCCTT
GGGTCAAATCGACCGCGCCTTTGGTAAAGGCTCTGTCATGAAATTGGGCGACAAAAGCGCGATGGATATCGCCTCTGTCT
CGACAGGCTCAATTGGACTGGATATCGCCCTCGGCATAGGCGGCTTACCGCGTGGCCGTGTCATTGAAATTTACGGTCCT
GAATCATCTGGTAAAACGACTTTGTCCTTGCACTGTGTCGCTGAAATCCAAAAAGAAGGCGGTGTTGCAGCCTTTATTGA
CGCCGAACATGCGCTTGACCCGACATATGCGGCCAAGCTTGGCGTTGACGTGAACGAGCTTTTGATCGCGCAGCCTGACA
CGGGTGAACAAGGTCTTGAAATTGCCGACACATTGGTGCGCTCTGGCGCGATTGATGTTTTGGTCATCGACTCTGTTGCG
GCCCTAACGCCGCGTGCTGAGCTTGAAGGCGATATGGGTGATAGTTTGCCAGGATTGCAAGCGCGTCTGATGAGCCAAGC
GCTGCGTAAGCTGACAGGGTCTATTTCCAAATCCGGCTGTATGGTTATTTTCATCAACCAAATTCGGATGAAAATCGGTG
TCATGTATGGCTCGCCCGAGACGACAACGGGTGGTAATGCGCTGAAATTTTACTCGTCTGTGCGTCTTGATATTCGCCGT
ATTGGCGCGATTAAGCACCGCGACGAAGTGGTGGGTAACCAGACCCGTGTGAAAGTTGTGAAAAACAAAGTGGCCCCGCC
TTTCCGCCAAGTCGAATTTGACATCATGTATGGCGAGGGGATCTCCAAAACGGGCGAGATTATCGATATGGGTGTTATGG
CTGGCGTGATTGAAAAGTCAGGGAGCTGGTATAGCTACGGCGAAGAACGTATTGGGCAGGGTCGTGAAAACGTCCGCCAA
TTCCTTATCGCTAATCCAGATATTGCTGATGCGGTTGAACTTAAAATTCGCCAAGAAAAAGGCCTCATTGCGGATGAATT
GCTTGTCCCCAAAGAAGAGCAAAATGACGATATCACGGATATTCCCGCGATTAAGGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

70.122

89.617

0.628
  recA Neisseria gonorrhoeae strain FA1090

68.712

89.071

0.612
  recA Neisseria gonorrhoeae MS11

68.712

89.071

0.612
  recA Neisseria gonorrhoeae MS11

68.712

89.071

0.612
  recA Glaesserella parasuis strain SC1401

62.117

98.087

0.609
  recA Pseudomonas stutzeri DSM 10701

68.012

87.978

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

66.769

88.798

0.593
  recA Acinetobacter baumannii D1279779

65.741

88.525

0.582
  recA Acinetobacter baylyi ADP1

65.741

88.525

0.582
  recA Helicobacter pylori strain NCTC11637

62.647

92.896

0.582
  recA Helicobacter pylori 26695

62.647

92.896

0.582
  recA Vibrio cholerae strain A1552

65.944

88.251

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.944

88.251

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

62.687

91.53

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.415

89.617

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

89.617

0.568
  recA Streptococcus mitis NCTC 12261

55.435

100

0.557
  recA Streptococcus mutans UA159

55.014

100

0.555
  recA Streptococcus mitis SK321

54.891

100

0.552
  recA Streptococcus pneumoniae R6

55.989

98.087

0.549
  recA Streptococcus pneumoniae Rx1

55.989

98.087

0.549
  recA Streptococcus pneumoniae D39

55.989

98.087

0.549
  recA Streptococcus pneumoniae TIGR4

55.989

98.087

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.62

85.519

0.536
  recA Streptococcus pyogenes NZ131

60

87.432

0.525
  recA Lactococcus lactis subsp. cremoris KW2

55.043

94.809

0.522

Multiple sequence alignment