Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB5B06_RS16375 Genome accession   NZ_CP163419
Coordinates   2522277..2523368 (+) Length   363 a.a.
NCBI ID   WP_416047662.1    Uniprot ID   -
Organism   Cupriavidus basilensis strain BL-MT-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2517277..2528368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5B06_RS16355 - 2517358..2519058 (-) 1701 WP_416047658.1 MFS transporter -
  AB5B06_RS16360 - 2519322..2519639 (-) 318 WP_416047659.1 DUF4212 domain-containing protein -
  AB5B06_RS16365 - 2519636..2521192 (-) 1557 WP_416047660.1 sensor histidine kinase N-terminal domain-containing protein -
  AB5B06_RS16370 - 2521293..2521979 (-) 687 WP_416047661.1 response regulator -
  AB5B06_RS16375 recA 2522277..2523368 (+) 1092 WP_416047662.1 recombinase RecA Machinery gene
  AB5B06_RS16380 recX 2523497..2523964 (+) 468 WP_416047663.1 recombination regulator RecX -
  AB5B06_RS16385 - 2524290..2524964 (+) 675 WP_253930334.1 DUF2889 domain-containing protein -
  AB5B06_RS16390 sucC 2525034..2526200 (+) 1167 WP_043343899.1 ADP-forming succinate--CoA ligase subunit beta -
  AB5B06_RS16395 sucD 2526282..2527163 (+) 882 WP_043343904.1 succinate--CoA ligase subunit alpha -
  AB5B06_RS16400 - 2527470..2528165 (+) 696 WP_174428683.1 TerC family protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38266.82 Da        Isoelectric Point: 4.9488

>NTDB_id=1029606 AB5B06_RS16375 WP_416047662.1 2522277..2523368(+) (recA) [Cupriavidus basilensis strain BL-MT-10]
MDDGKKAGAGVSAEKQKALAAALAQIEKQFGKGSIMKLGEADIDQDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYAGKLGVSVGDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS
IKKGDEVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKVVEKSGAWYSYKGEKIGQGKDNAREYLR
ENPDIADEIENKVRESLGVVLMNGTPATAGAVATAGAVATAED

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=1029606 AB5B06_RS16375 WP_416047662.1 2522277..2523368(+) (recA) [Cupriavidus basilensis strain BL-MT-10]
ATGGATGACGGCAAGAAGGCGGGTGCTGGCGTAAGCGCCGAAAAGCAGAAGGCGCTGGCGGCCGCGCTGGCCCAGATCGA
GAAGCAGTTCGGCAAGGGCTCGATCATGAAACTGGGCGAAGCCGACATCGACCAGGATATCCAGGTCGTGTCCACCGGCT
CGCTGGGCCTGGACATCGCGCTGGGCGTCGGCGGGCTGCCGCGCGGCCGCGTCGTGGAAATCTACGGTCCGGAATCCTCG
GGCAAGACCACGCTGACGCTGCAGGTCGTGGCCGAAATGCAAAAACTGGGCGGCACCTGCGCCTTTATCGATGCCGAGCA
CGCGCTCGACGTCAACTATGCCGGCAAGCTCGGCGTGTCCGTGGGCGACCTGCTGATCTCCCAGCCCGACACCGGCGAGC
AGGCACTGGAAATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTGATCGACTCGGTGGCGGCCCTGGTG
CCCAAGGCCGAAATCGAAGGCGAGATGGGCGATTCGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAA
GCTGACCGGCACCATCAAGCGCACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCTCG
ATCAAGAAGGGCGATGAGGTGATCGGCAACGAAACCAAGGTCAAGGTAGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGA
AGCCTTCTTCGACATCCTCTACGGCCAGGGCATCTCGCGCCAGGGCGAAATCATCGATCTCGGCGTGGACGCCAAGGTCG
TCGAGAAGTCGGGCGCGTGGTACAGCTACAAGGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGTGAATACCTGCGC
GAGAATCCGGACATCGCCGACGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCGTAGTCCTGATGAACGGCACGCCGGC
CACCGCCGGCGCCGTGGCCACCGCCGGCGCCGTGGCCACCGCCGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

88.889

94.215

0.837
  recA Pseudomonas stutzeri DSM 10701

75.449

92.011

0.694
  recA Neisseria gonorrhoeae MS11

72.781

93.113

0.678
  recA Neisseria gonorrhoeae strain FA1090

72.781

93.113

0.678
  recA Neisseria gonorrhoeae MS11

72.781

93.113

0.678
  recA Acinetobacter baylyi ADP1

73.684

88.981

0.656
  recA Glaesserella parasuis strain SC1401

73.148

89.256

0.653
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.065

88.981

0.65
  recA Vibrio cholerae strain A1552

73.065

88.981

0.65
  recA Acinetobacter baumannii D1279779

71.515

90.909

0.65
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

90.634

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

90.083

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

89.807

0.584
  recA Helicobacter pylori 26695

64.134

90.634

0.581
  recA Helicobacter pylori strain NCTC11637

63.83

90.634

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

64.11

89.807

0.576
  recA Streptococcus pneumoniae TIGR4

62.048

91.46

0.567
  recA Streptococcus pneumoniae R6

62.048

91.46

0.567
  recA Streptococcus mitis NCTC 12261

62.048

91.46

0.567
  recA Lactococcus lactis subsp. cremoris KW2

62.048

91.46

0.567
  recA Streptococcus pneumoniae Rx1

62.048

91.46

0.567
  recA Streptococcus pneumoniae D39

62.048

91.46

0.567
  recA Streptococcus mitis SK321

61.446

91.46

0.562
  recA Streptococcus mutans UA159

60.714

92.562

0.562
  recA Streptococcus pyogenes NZ131

60.79

90.634

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

88.43

0.545

Multiple sequence alignment