Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB4Y39_RS15775 Genome accession   NZ_CP162607
Coordinates   3414845..3415915 (-) Length   356 a.a.
NCBI ID   WP_045187786.1    Uniprot ID   A0AB39JES0
Organism   Pseudomonas sp. Hg7Tf     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3414845..3439721 3414845..3415915 within 0


Gene organization within MGE regions


Location: 3414845..3439721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y39_RS15775 (AB4Y39_15775) recA 3414845..3415915 (-) 1071 WP_045187786.1 recombinase RecA Machinery gene
  AB4Y39_RS15780 (AB4Y39_15780) - 3416019..3416501 (-) 483 WP_045187788.1 CinA family protein -
  AB4Y39_RS15785 (AB4Y39_15785) - 3416561..3417061 (-) 501 WP_274071220.1 lysis system i-spanin subunit Rz -
  AB4Y39_RS15790 (AB4Y39_15790) - 3417058..3417603 (-) 546 WP_045187790.1 glycoside hydrolase family 19 protein -
  AB4Y39_RS15795 (AB4Y39_15795) - 3417662..3418678 (-) 1017 WP_280042438.1 phage late control D family protein -
  AB4Y39_RS15800 (AB4Y39_15800) - 3418747..3418953 (-) 207 WP_045187793.1 tail protein X -
  AB4Y39_RS15805 (AB4Y39_15805) - 3418928..3419773 (-) 846 WP_101292189.1 phage tail protein -
  AB4Y39_RS15810 (AB4Y39_15810) - 3419783..3422125 (-) 2343 WP_280042440.1 phage tail tape measure protein -
  AB4Y39_RS15815 (AB4Y39_15815) - 3422267..3422569 (-) 303 WP_045187798.1 phage tail assembly protein -
  AB4Y39_RS15820 (AB4Y39_15820) - 3422579..3423088 (-) 510 WP_045187800.1 phage major tail tube protein -
  AB4Y39_RS15825 (AB4Y39_15825) - 3423101..3424267 (-) 1167 WP_045187802.1 phage tail sheath family protein -
  AB4Y39_RS15830 (AB4Y39_15830) - 3424358..3424756 (-) 399 WP_256205396.1 phage tail assembly chaperone -
  AB4Y39_RS15835 (AB4Y39_15835) - 3424809..3426605 (-) 1797 WP_280042443.1 phage tail protein -
  AB4Y39_RS15840 (AB4Y39_15840) - 3426605..3427207 (-) 603 WP_045187807.1 phage tail protein I -
  AB4Y39_RS15845 (AB4Y39_15845) - 3427209..3428090 (-) 882 WP_045187809.1 baseplate J/gp47 family protein -
  AB4Y39_RS15850 (AB4Y39_15850) - 3428087..3428413 (-) 327 WP_101292186.1 GPW/gp25 family protein -
  AB4Y39_RS15855 (AB4Y39_15855) - 3428418..3428615 (-) 198 WP_101292185.1 hypothetical protein -
  AB4Y39_RS15860 (AB4Y39_15860) - 3428657..3429217 (-) 561 WP_045187814.1 phage baseplate assembly protein V -
  AB4Y39_RS15865 (AB4Y39_15865) - 3429214..3429732 (-) 519 WP_280042448.1 hypothetical protein -
  AB4Y39_RS15870 (AB4Y39_15870) - 3429735..3430100 (-) 366 WP_045187818.1 phage holin family protein -
  AB4Y39_RS15875 (AB4Y39_15875) - 3430579..3431322 (-) 744 WP_045187820.1 XRE family transcriptional regulator -
  AB4Y39_RS15880 (AB4Y39_15880) mutS 3431482..3434049 (+) 2568 WP_045187821.1 DNA mismatch repair protein MutS -
  AB4Y39_RS15885 (AB4Y39_15885) fdxA 3434190..3434513 (+) 324 WP_045187823.1 ferredoxin FdxA -
  AB4Y39_RS15890 (AB4Y39_15890) - 3435081..3435374 (+) 294 WP_220639103.1 transposase -
  AB4Y39_RS15895 (AB4Y39_15895) - 3435371..3436234 (+) 864 WP_220639102.1 IS3 family transposase -
  AB4Y39_RS15900 (AB4Y39_15900) rpoS 3436871..3437878 (-) 1008 WP_045189722.1 RNA polymerase sigma factor RpoS -
  AB4Y39_RS15905 (AB4Y39_15905) - 3437986..3438864 (-) 879 WP_274071279.1 peptidoglycan DD-metalloendopeptidase family protein -
  AB4Y39_RS15910 (AB4Y39_15910) - 3439044..3439721 (-) 678 WP_045189718.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37911.44 Da        Isoelectric Point: 5.5210

>NTDB_id=1027446 AB4Y39_RS15775 WP_045187786.1 3414845..3415915(-) (recA) [Pseudomonas sp. Hg7Tf]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGFLEKSGAWYSYQGSKIGQGKANSAKFLQENPEIAATLEK
QIRDKLLNAGAVEAAAKAAAVTAEPEDDLADAEAGY

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1027446 AB4Y39_RS15775 WP_045187786.1 3414845..3415915(-) (recA) [Pseudomonas sp. Hg7Tf]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGGCAAATCGAGCGTCAATTCGGTAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGTCAGGCGATCCCGGCCATTTCCACTGGCTCCCTGGGCCTGGACATTGCCCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTCGAGATCTACGGCCCTGAGTCGTCCGGTAAAACCACGCTGACCCTGTCGGTTATCGCC
CAGGCTCAGAAAATGGGCGCTACCTGTGCCTTCGTCGACGCCGAACACGCGCTGGATCCCGAGTACGCTGGCAAGTTGGG
CGTCAATGTCGACGACCTGCTGGTCTCGCAGCCTGATACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTAGACGTGATCATCGTCGACTCCGTTGCCGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGCCTGATGTCTCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTATGCTTCGGTCCGTCTCGACATCCGTCGCACTGGCGCGGTGAAAGAAGGCGACGAAGTGGTCGGCAGTGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTGGCACCGCCGTTCCGTCAGGCTGAATTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAGATCATTGACCTCGGCGTGCTGCACGGCTTCCTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAGCAAAATCGGTCAGGGCAAAGCCAACTCGGCCAAGTTCCTCCAGGAGAACCCGGAGATCGCCGCTACCCTCGAGAAG
CAGATCCGCGACAAGCTGCTCAATGCCGGTGCTGTTGAGGCTGCTGCCAAGGCTGCTGCGGTCACCGCCGAGCCTGAAGA
CGATCTGGCTGACGCCGAAGCCGGCTACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.385

99.157

0.876
  recA Acinetobacter baylyi ADP1

72.159

98.876

0.713
  recA Acinetobacter baumannii D1279779

71.92

98.034

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.965

97.191

0.699
  recA Vibrio cholerae strain A1552

71.965

97.191

0.699
  recA Glaesserella parasuis strain SC1401

70.774

98.034

0.694
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.101

0.669
  recA Neisseria gonorrhoeae MS11

71.605

91.011

0.652
  recA Neisseria gonorrhoeae MS11

71.605

91.011

0.652
  recA Neisseria gonorrhoeae strain FA1090

71.605

91.011

0.652
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

91.854

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

93.82

0.581
  recA Helicobacter pylori strain NCTC11637

61.774

91.854

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

61.027

92.978

0.567
  recA Helicobacter pylori 26695

61.162

91.854

0.562
  recA Streptococcus pyogenes NZ131

55.682

98.876

0.551
  recA Streptococcus mutans UA159

59.385

91.292

0.542
  recA Latilactobacillus sakei subsp. sakei 23K

54.986

98.596

0.542
  recA Streptococcus pneumoniae D39

58.589

91.573

0.537
  recA Streptococcus pneumoniae Rx1

58.589

91.573

0.537
  recA Streptococcus pneumoniae R6

58.589

91.573

0.537
  recA Streptococcus pneumoniae TIGR4

58.589

91.573

0.537
  recA Streptococcus mitis NCTC 12261

58.204

90.73

0.528
  recA Streptococcus mitis SK321

58.204

90.73

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

91.573

0.517
  recA Lactococcus lactis subsp. cremoris KW2

56.037

90.73

0.508

Multiple sequence alignment