Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB0763_RS11270 Genome accession   NZ_CP162601
Coordinates   2569190..2570239 (-) Length   349 a.a.
NCBI ID   WP_306100590.1    Uniprot ID   A0AB39HFR5
Organism   Vibrio sp. HB236076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2564190..2575239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS11255 (AB0763_11255) alaS 2564297..2566885 (-) 2589 WP_306100593.1 alanine--tRNA ligase -
  AB0763_RS11260 (AB0763_11260) - 2567302..2568528 (+) 1227 WP_306100592.1 OFA family MFS transporter -
  AB0763_RS11265 (AB0763_11265) recX 2568569..2569027 (-) 459 WP_306100591.1 recombination regulator RecX -
  AB0763_RS11270 (AB0763_11270) recA 2569190..2570239 (-) 1050 WP_306100590.1 recombinase RecA Machinery gene
  AB0763_RS11275 (AB0763_11275) - 2570359..2570868 (-) 510 WP_306100589.1 CinA family protein -
  AB0763_RS11280 (AB0763_11280) - 2571157..2572629 (+) 1473 WP_306100588.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37567.02 Da        Isoelectric Point: 5.1662

>NTDB_id=1027407 AB0763_RS11270 WP_306100590.1 2569190..2570239(-) (recA) [Vibrio sp. HB236076]
MDDNKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACKFMRENPEAAHVLDR
TLRDMLLAPTKPADNVEVDSASPQAEDEF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1027407 AB0763_RS11270 WP_306100590.1 2569190..2570239(-) (recA) [Vibrio sp. HB236076]
ATGGACGATAATAAACAAAAAGCACTGGCAGCAGCGCTTGGTCAAATCGAAAAACAATTTGGTAAAGGCTCGATCATGCG
CCTGGGTGATAACCGAGCCATGGATGTTGAGACCATTTCGACTGGCTCACTTTCTCTCGATATCGCCCTTGGTGCTGGTG
GTTTGCCAATGGGACGTATCGTCGAGATATACGGCCCGGAATCCTCAGGTAAAACGACATTGACGTTGGAGTTGATTGCT
GCAGCGCAACGCGAAGGAAAAACCTGTGCCTTTATCGATGCCGAGCACGCCCTTGACCCGGTATACGCGAAAAAATTGGG
AGTCGACATTGACGCCTTATTAGTTTCTCAGCCTGATACCGGTGAGCAAGCGTTAGAGATCTGTGATGCTCTAGCTCGTT
CTGGGGCGATTGACGTCATGGTTGTCGACTCAGTTGCGGCTTTGACACCCAAGGCCGAGATTGAAGGCGAAATGGGTGAC
AGTCACATGGGTCTACAAGCTCGTATGTTGTCACAAGCGATGCGTAAGTTAACCGGTAACTTAAAGCAATCGAACTGTAT
GTGTATCTTTATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGCAACCCAGAAACCACAACGGGTGGTAATGCAC
TAAAATTCTACGCTTCTGTTCGCTTGGATATTCGCCGTACTGGCGCTATCAAAGAAGGCGATGAAGTGGTTGGTAATGAA
ACGCGTATTAAAGTGGTTAAGAATAAGATTGCAGCGCCATTTAAAGAAGCAAACACGCAAATTATGTACGGGCAAGGCTT
TAACCGCGAAGGTGAGTTGATCGATTTAGGCGTGAAACATAAATTGGTCGAAAAAGCGGGGGCTTGGTACAGTTACAATG
GCGATAAAATCGGCCAGGGTAAAGCCAATGCGTGTAAATTTATGCGTGAAAACCCAGAAGCCGCACACGTACTCGACAGA
ACATTACGCGATATGTTACTTGCGCCGACTAAGCCGGCTGACAATGTTGAAGTGGACAGTGCAAGCCCACAAGCGGAAGA
TGAATTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

90.751

99.14

0.9
  recA Vibrio cholerae O1 biovar El Tor strain E7946

90.751

99.14

0.9
  recA Pseudomonas stutzeri DSM 10701

71.47

99.427

0.711
  recA Acinetobacter baylyi ADP1

70.977

99.713

0.708
  recA Acinetobacter baumannii D1279779

74.006

93.696

0.693
  recA Glaesserella parasuis strain SC1401

70.988

92.837

0.659
  recA Neisseria gonorrhoeae MS11

68.519

92.837

0.636
  recA Neisseria gonorrhoeae MS11

68.519

92.837

0.636
  recA Neisseria gonorrhoeae strain FA1090

68.519

92.837

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.74

89.112

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

93.696

0.582
  recA Streptococcus mitis NCTC 12261

57.835

100

0.582
  recA Helicobacter pylori strain NCTC11637

58.261

98.854

0.576
  recA Helicobacter pylori 26695

57.971

98.854

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.977

0.57
  recA Streptococcus pneumoniae D39

61.61

92.55

0.57
  recA Streptococcus pneumoniae TIGR4

61.61

92.55

0.57
  recA Streptococcus pneumoniae Rx1

61.61

92.55

0.57
  recA Streptococcus pneumoniae R6

61.61

92.55

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

93.983

0.567
  recA Streptococcus mutans UA159

60.923

93.123

0.567
  recA Streptococcus mitis SK321

61.3

92.55

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.459

95.415

0.567
  recA Streptococcus pyogenes NZ131

60.308

93.123

0.562
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

61.489

88.539

0.544

Multiple sequence alignment