Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB4Y30_RS07620 Genome accession   NZ_CP162599
Coordinates   1576555..1577598 (+) Length   347 a.a.
NCBI ID   WP_368654885.1    Uniprot ID   A0AB39HV55
Organism   Ornithinibacillus sp. 4-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1571555..1582598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y30_RS07595 (AB4Y30_07595) - 1571915..1572625 (+) 711 WP_368654880.1 SDR family oxidoreductase -
  AB4Y30_RS07600 (AB4Y30_07600) - 1572704..1572961 (+) 258 WP_368654881.1 DUF3243 domain-containing protein -
  AB4Y30_RS07605 (AB4Y30_07605) - 1573529..1574404 (+) 876 WP_368654882.1 helix-turn-helix domain-containing protein -
  AB4Y30_RS07610 (AB4Y30_07610) pgsA 1574567..1575145 (+) 579 WP_368654883.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB4Y30_RS07615 (AB4Y30_07615) - 1575142..1576389 (+) 1248 WP_368654884.1 competence/damage-inducible protein A -
  AB4Y30_RS07620 (AB4Y30_07620) recA 1576555..1577598 (+) 1044 WP_368654885.1 recombinase RecA Machinery gene
  AB4Y30_RS07625 (AB4Y30_07625) - 1577802..1578923 (+) 1122 WP_368654886.1 CAP-associated domain-containing protein -
  AB4Y30_RS07630 (AB4Y30_07630) rny 1579442..1581007 (+) 1566 WP_368654887.1 ribonuclease Y -
  AB4Y30_RS07635 (AB4Y30_07635) - 1581103..1581900 (+) 798 WP_368654888.1 TIGR00282 family metallophosphoesterase -
  AB4Y30_RS07640 (AB4Y30_07640) - 1582013..1582273 (+) 261 WP_368655193.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37706.98 Da        Isoelectric Point: 4.9972

>NTDB_id=1027372 AB4Y30_RS07620 WP_368654885.1 1576555..1577598(+) (recA) [Ornithinibacillus sp. 4-3]
MSDRKQALDMALRQIEKQFGKGSVMKLGEDAERKIATIPSGSLALDIALGIGGYPKGRVIEIYGPESSGKTTVALHAIAE
AQKNGGQVAFIDAEHALDPKYARALGVNIDELLLSQPDTGEQALEISEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGIMFGNPETTPGGRALKFYSSVRLEVRRAETIKQGNDMVGNKT
RIKVVKNKVAPPFTQALVDIMYGEGISKEGEILDIGSELDIVEKSGAWYSYEGERLGQGRENAKQFLRENEAVMNTIHQA
IRAHYKLDEVETADVREEVPEQDALDL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1027372 AB4Y30_RS07620 WP_368654885.1 1576555..1577598(+) (recA) [Ornithinibacillus sp. 4-3]
TTGAGTGATAGAAAACAAGCTTTAGACATGGCGTTAAGACAAATAGAGAAACAATTTGGTAAAGGATCAGTTATGAAACT
TGGTGAAGATGCAGAACGAAAAATCGCAACCATCCCAAGTGGATCCTTGGCTTTAGATATTGCATTAGGAATAGGTGGGT
ATCCTAAGGGACGTGTAATTGAAATTTATGGACCAGAATCTTCTGGTAAAACAACGGTGGCCCTCCATGCGATTGCGGAA
GCGCAGAAAAATGGTGGACAAGTTGCTTTTATTGATGCAGAGCACGCACTTGATCCTAAATATGCAAGAGCGCTTGGAGT
GAATATAGATGAGTTATTATTATCACAGCCAGATACTGGAGAGCAAGCATTAGAGATTTCAGAAGCTCTAGTACGAAGCG
GTGCTATTGATATTATCGTAATTGACTCTGTAGCAGCACTTGTGCCAAAAGCAGAGATTGAAGGAGAAATGGGCGATGCA
CATGTTGGTTTACAAGCTCGTCTAATGTCCCAAGCATTAAGAAAATTATCTGGTGCGATTAATAAATCAAATACCATTGC
TATTTTTATCAACCAAATTCGTGAAAAAGTAGGAATCATGTTTGGTAACCCTGAAACAACACCGGGTGGAAGAGCCCTAA
AATTCTACTCTTCCGTTCGTTTAGAAGTAAGAAGAGCTGAAACTATTAAGCAAGGAAATGACATGGTAGGTAATAAAACA
AGAATTAAAGTTGTAAAAAATAAAGTAGCTCCACCATTTACTCAAGCTCTTGTTGATATCATGTATGGTGAAGGAATCTC
TAAAGAGGGAGAGATTTTAGATATTGGTTCAGAATTAGATATTGTTGAGAAGAGTGGAGCTTGGTATTCTTATGAAGGCG
AAAGACTTGGACAAGGTCGTGAGAATGCAAAACAATTTTTACGGGAAAATGAAGCCGTAATGAATACAATCCATCAAGCA
ATTAGAGCCCATTATAAATTAGATGAAGTAGAAACAGCAGATGTTCGTGAAGAAGTTCCTGAACAAGATGCTTTAGATTT
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.927

94.524

0.784
  recA Latilactobacillus sakei subsp. sakei 23K

70.588

97.983

0.692
  recA Streptococcus mitis SK321

66.097

100

0.669
  recA Streptococcus pneumoniae R6

67.052

99.712

0.669
  recA Streptococcus pneumoniae Rx1

67.052

99.712

0.669
  recA Streptococcus pneumoniae D39

67.052

99.712

0.669
  recA Streptococcus pneumoniae TIGR4

67.052

99.712

0.669
  recA Streptococcus mutans UA159

66.667

99.424

0.663
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Lactococcus lactis subsp. cremoris KW2

66.172

97.118

0.643
  recA Streptococcus pyogenes NZ131

67.89

94.236

0.64
  recA Pseudomonas stutzeri DSM 10701

62.099

98.847

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.526

94.236

0.608
  recA Neisseria gonorrhoeae strain FA1090

65.217

92.795

0.605
  recA Neisseria gonorrhoeae MS11

65.217

92.795

0.605
  recA Neisseria gonorrhoeae MS11

65.217

92.795

0.605
  recA Acinetobacter baylyi ADP1

60

99.424

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.174

92.507

0.594
  recA Helicobacter pylori strain NCTC11637

63.863

92.507

0.591
  recA Helicobacter pylori 26695

63.863

92.507

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

92.219

0.591
  recA Vibrio cholerae strain A1552

64.062

92.219

0.591
  recA Glaesserella parasuis strain SC1401

63.323

91.931

0.582
  recA Acinetobacter baumannii D1279779

62.813

92.219

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.123

93.948

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

93.948

0.55

Multiple sequence alignment