Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB4P94_RS00290 Genome accession   NZ_CP162592
Coordinates   58069..59127 (-) Length   352 a.a.
NCBI ID   WP_395608923.1    Uniprot ID   -
Organism   Pseudomonas sp. B22129     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 58069..75940 58069..59127 within 0


Gene organization within MGE regions


Location: 58069..75940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P94_RS00290 (AB4P94_00290) recA 58069..59127 (-) 1059 WP_395608923.1 recombinase RecA Machinery gene
  AB4P94_RS00295 (AB4P94_00295) - 59212..59712 (-) 501 WP_395608924.1 CinA family protein -
  AB4P94_RS00300 (AB4P94_00300) - 59794..60294 (-) 501 WP_395608925.1 lysis system i-spanin subunit Rz -
  AB4P94_RS00305 (AB4P94_00305) - 60282..60839 (-) 558 WP_395608926.1 glycoside hydrolase family 19 protein -
  AB4P94_RS00310 (AB4P94_00310) - 60846..61853 (-) 1008 WP_395608927.1 phage late control D family protein -
  AB4P94_RS00315 (AB4P94_00315) - 61863..62075 (-) 213 WP_395608928.1 tail protein X -
  AB4P94_RS00320 (AB4P94_00320) - 62068..62451 (-) 384 WP_395608929.1 phage tail protein -
  AB4P94_RS00325 (AB4P94_00325) - 62451..64676 (-) 2226 WP_395608930.1 phage tail tape measure protein -
  AB4P94_RS00330 (AB4P94_00330) - 64805..65377 (-) 573 WP_395608931.1 phage tail assembly protein -
  AB4P94_RS00335 (AB4P94_00335) - 65598..66104 (-) 507 WP_395608932.1 phage major tail tube protein -
  AB4P94_RS00340 (AB4P94_00340) - 66104..67270 (-) 1167 WP_016970774.1 tail protein -
  AB4P94_RS00345 (AB4P94_00345) - 67273..67446 (-) 174 WP_395608933.1 hypothetical protein -
  AB4P94_RS00350 (AB4P94_00350) - 67532..68170 (-) 639 WP_395608934.1 hypothetical protein -
  AB4P94_RS00355 (AB4P94_00355) - 68173..70296 (-) 2124 WP_395608935.1 phage tail protein -
  AB4P94_RS00360 (AB4P94_00360) - 70297..70926 (-) 630 WP_395608936.1 phage tail protein I -
  AB4P94_RS00365 (AB4P94_00365) - 70923..71918 (-) 996 WP_395608937.1 baseplate J/gp47 family protein -
  AB4P94_RS00370 (AB4P94_00370) - 71915..72247 (-) 333 WP_176999501.1 phage baseplate protein -
  AB4P94_RS00375 (AB4P94_00375) - 72260..72868 (-) 609 WP_395608938.1 phage baseplate assembly protein V -
  AB4P94_RS00380 (AB4P94_00380) - 72872..73387 (-) 516 WP_395608939.1 hypothetical protein -
  AB4P94_RS00385 (AB4P94_00385) - 73473..73988 (-) 516 WP_395608940.1 hypothetical protein -
  AB4P94_RS00390 (AB4P94_00390) - 73978..74181 (-) 204 WP_395608941.1 Com family DNA-binding transcriptional regulator -
  AB4P94_RS00395 (AB4P94_00395) - 74267..74611 (-) 345 WP_395608942.1 phage holin family protein -
  AB4P94_RS00400 (AB4P94_00400) - 75206..75940 (-) 735 WP_395608943.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37665.23 Da        Isoelectric Point: 5.3036

>NTDB_id=1027304 AB4P94_RS00290 WP_395608923.1 58069..59127(-) (recA) [Pseudomonas sp. B22129]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLQDNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEVDTDI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1027304 AB4P94_RS00290 WP_395608923.1 58069..59127(-) (recA) [Pseudomonas sp. B22129]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAGAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGACCCAGAGTACGCTGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTATCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTGCCGAAGGCTGAAATTGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGT
TGAAGTTCTACGCATCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGCGACGAGGTTGTCGGCAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCTCCGCCATTCCGTCAGGCTGAGTTCCAGATTCTCTACGGTAAAGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAAGACAACCCGGATATCGCTGCCACGCTTGAAAAG
CAGATTCGCGACAAGCTGCTCACCGCAGCCCCAGACGTGAAAGCTGCCGCTAACCGCGAGCCGGTTGAAGAAGTTGAAGA
AGTCGACACTGACATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.216

100

0.872
  recA Acinetobacter baylyi ADP1

75

97.727

0.733
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

93.182

0.699
  recA Vibrio cholerae strain A1552

75

93.182

0.699
  recA Glaesserella parasuis strain SC1401

69.429

99.432

0.69
  recA Ralstonia pseudosolanacearum GMI1000

70.149

95.17

0.668
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.659

100

0.597
  recA Helicobacter pylori 26695

59.091

100

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

59.692

92.33

0.551
  recA Streptococcus mitis SK321

54.83

100

0.548
  recA Streptococcus pyogenes NZ131

57.927

93.182

0.54
  recA Streptococcus pneumoniae D39

58.282

92.614

0.54
  recA Streptococcus pneumoniae TIGR4

58.282

92.614

0.54
  recA Streptococcus pneumoniae Rx1

58.282

92.614

0.54
  recA Streptococcus pneumoniae R6

58.282

92.614

0.54
  recA Streptococcus mitis NCTC 12261

58.514

91.761

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.193

0.534
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

92.614

0.523

Multiple sequence alignment