Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | AB4P97_RS01705 | Genome accession | NZ_CP162582 |
| Coordinates | 369645..370703 (+) | Length | 352 a.a. |
| NCBI ID | WP_042557927.1 | Uniprot ID | A0A9X4BXU9 |
| Organism | Pseudomonas sp. A1230 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 336427..371180 | 369645..370703 | within | 0 |
Gene organization within MGE regions
Location: 336427..371180
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4P97_RS01515 (AB4P97_01515) | - | 336427..337323 (-) | 897 | WP_042557894.1 | LysR substrate-binding domain-containing protein | - |
| AB4P97_RS01520 (AB4P97_01520) | - | 337440..338552 (+) | 1113 | WP_042557895.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| AB4P97_RS01525 (AB4P97_01525) | fghA | 338618..339463 (+) | 846 | WP_042557896.1 | S-formylglutathione hydrolase | - |
| AB4P97_RS01530 (AB4P97_01530) | ispF | 339508..339981 (+) | 474 | WP_042557897.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| AB4P97_RS01535 (AB4P97_01535) | truD | 339978..341036 (+) | 1059 | WP_395601984.1 | tRNA pseudouridine(13) synthase TruD | - |
| AB4P97_RS01540 (AB4P97_01540) | surE | 341024..341773 (+) | 750 | WP_042557899.1 | 5'/3'-nucleotidase SurE | - |
| AB4P97_RS01545 (AB4P97_01545) | - | 341815..342450 (+) | 636 | WP_170947254.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| AB4P97_RS01550 (AB4P97_01550) | - | 342662..343531 (+) | 870 | WP_047300200.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| AB4P97_RS01555 (AB4P97_01555) | rpoS | 343638..344648 (+) | 1011 | WP_047299921.1 | RNA polymerase sigma factor RpoS | - |
| AB4P97_RS01560 (AB4P97_01560) | fdxA | 345170..345493 (-) | 324 | WP_007908827.1 | ferredoxin FdxA | - |
| AB4P97_RS01565 (AB4P97_01565) | mutS | 345657..348236 (-) | 2580 | WP_395601985.1 | DNA mismatch repair protein MutS | - |
| AB4P97_RS01570 (AB4P97_01570) | - | 348439..349182 (+) | 744 | WP_080895993.1 | XRE family transcriptional regulator | - |
| AB4P97_RS01575 (AB4P97_01575) | - | 349707..350051 (+) | 345 | WP_042557905.1 | phage holin family protein | - |
| AB4P97_RS01580 (AB4P97_01580) | - | 350090..350260 (+) | 171 | WP_080895994.1 | Com family DNA-binding transcriptional regulator | - |
| AB4P97_RS01585 (AB4P97_01585) | - | 350286..351128 (+) | 843 | WP_042557906.1 | putidacin L1 family lectin-like bacteriocin | - |
| AB4P97_RS01590 (AB4P97_01590) | - | 351384..351968 (+) | 585 | WP_042557907.1 | hypothetical protein | - |
| AB4P97_RS01595 (AB4P97_01595) | - | 351965..352147 (+) | 183 | WP_003222219.1 | DUF2635 domain-containing protein | - |
| AB4P97_RS01600 (AB4P97_01600) | - | 352147..353643 (+) | 1497 | WP_273875135.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| AB4P97_RS01605 (AB4P97_01605) | - | 353711..354058 (+) | 348 | WP_042557909.1 | phage tail tube protein | - |
| AB4P97_RS01610 (AB4P97_01610) | - | 354055..354351 (+) | 297 | WP_007908778.1 | phage tail assembly protein | - |
| AB4P97_RS01615 (AB4P97_01615) | - | 354482..356602 (+) | 2121 | WP_395601986.1 | hypothetical protein | - |
| AB4P97_RS01620 (AB4P97_01620) | - | 356589..357824 (+) | 1236 | WP_047299941.1 | DNA circularization protein | - |
| AB4P97_RS01625 (AB4P97_01625) | - | 357828..358871 (+) | 1044 | WP_395601987.1 | phage baseplate assembly protein | - |
| AB4P97_RS01630 (AB4P97_01630) | - | 359012..359521 (+) | 510 | WP_042557912.1 | phage baseplate assembly protein V | - |
| AB4P97_RS01635 (AB4P97_01635) | - | 359521..359919 (+) | 399 | WP_042557913.1 | phage GP46 family protein | - |
| AB4P97_RS01640 (AB4P97_01640) | - | 359909..360955 (+) | 1047 | WP_047299944.1 | baseplate J/gp47 family protein | - |
| AB4P97_RS01645 (AB4P97_01645) | - | 360943..361542 (+) | 600 | WP_042557915.1 | YmfQ family protein | - |
| AB4P97_RS01650 (AB4P97_01650) | - | 361555..362712 (+) | 1158 | WP_395601988.1 | phage tail protein | - |
| AB4P97_RS01655 (AB4P97_01655) | - | 362709..363224 (+) | 516 | WP_210622058.1 | phage tail protein | - |
| AB4P97_RS01660 (AB4P97_01660) | - | 363362..364441 (+) | 1080 | WP_115146411.1 | phage tail protein | - |
| AB4P97_RS01665 (AB4P97_01665) | - | 364449..365015 (+) | 567 | WP_115146412.1 | tail fiber assembly protein | - |
| AB4P97_RS01670 (AB4P97_01670) | - | 365038..365964 (+) | 927 | WP_395601989.1 | hypothetical protein | - |
| AB4P97_RS01675 (AB4P97_01675) | - | 365964..366431 (+) | 468 | WP_395601990.1 | phage tail assembly chaperone | - |
| AB4P97_RS01680 (AB4P97_01680) | - | 366471..367367 (+) | 897 | WP_042557922.1 | hypothetical protein | - |
| AB4P97_RS01685 (AB4P97_01685) | - | 367368..367814 (+) | 447 | WP_100847370.1 | phage tail assembly chaperone | - |
| AB4P97_RS01690 (AB4P97_01690) | - | 367930..368496 (+) | 567 | WP_395601991.1 | glycoside hydrolase family 19 protein | - |
| AB4P97_RS01695 (AB4P97_01695) | - | 368475..368993 (+) | 519 | WP_115146417.1 | lysis system i-spanin subunit Rz | - |
| AB4P97_RS01700 (AB4P97_01700) | - | 369061..369561 (+) | 501 | WP_042557926.1 | CinA family protein | - |
| AB4P97_RS01705 (AB4P97_01705) | recA | 369645..370703 (+) | 1059 | WP_042557927.1 | recombinase RecA | Machinery gene |
| AB4P97_RS01710 (AB4P97_01710) | recX | 370713..371180 (+) | 468 | WP_115146419.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37532.20 Da Isoelectric Point: 5.8791
>NTDB_id=1027173 AB4P97_RS01705 WP_042557927.1 369645..370703(+) (recA) [Pseudomonas sp. A1230]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAKKLEK
QLRDKLLAPAADVKASLAKDKVDDMAEADVDV
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAKKLEK
QLRDKLLAPAADVKASLAKDKVDDMAEADVDV
Nucleotide
Download Length: 1059 bp
>NTDB_id=1027173 AB4P97_RS01705 WP_042557927.1 369645..370703(+) (recA) [Pseudomonas sp. A1230]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATTGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTATGGTCCTGAATCTTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCTGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTTGATGACCTGCTGGTTTCCCAGCCTGACACCGGCGAACAAGCTCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCTGCACTGGTGCCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAATGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATTCGCCGTACTGGCGCGGTGAAAGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAAAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTCGTCGAGAAGTCCGGCGCCTGGTACGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATCGCCAAGAAGCTCGAGAAG
CAACTGCGTGACAAACTGCTGGCCCCGGCGGCAGACGTCAAGGCTTCGCTGGCCAAGGACAAAGTCGACGATATGGCTGA
GGCCGATGTCGACGTTTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATTGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTATGGTCCTGAATCTTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCTCAAAAAGCTGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGACCCTGAGTACGCCGGCAAACTGGG
CGTCAACGTTGATGACCTGCTGGTTTCCCAGCCTGACACCGGCGAACAAGCTCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCTGCACTGGTGCCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTTATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAATGCGC
TGAAGTTCTACGCCTCGGTTCGTCTCGACATTCGCCGTACTGGCGCGGTGAAAGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAAAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTCGTCGAGAAGTCCGGCGCCTGGTACGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATCGCCAAGAAGCTCGAGAAG
CAACTGCGTGACAAACTGCTGGCCCCGGCGGCAGACGTCAAGGCTTCGCTGGCCAAGGACAAAGTCGACGATATGGCTGA
GGCCGATGTCGACGTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.