Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | AB3473_RS07710 | Genome accession | NZ_CP162537 |
| Coordinates | 1586834..1587880 (-) | Length | 348 a.a. |
| NCBI ID | WP_002507827.1 | Uniprot ID | A0A9X4L1K2 |
| Organism | Staphylococcus equorum strain UPB 1351 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1588603..1667196 | 1586834..1587880 | flank | 723 |
Gene organization within MGE regions
Location: 1586834..1667196
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3473_RS07710 (AB3473_07715) | recA | 1586834..1587880 (-) | 1047 | WP_002507827.1 | recombinase RecA | Machinery gene |
| AB3473_RS07715 (AB3473_07720) | - | 1588054..1589196 (-) | 1143 | WP_002507828.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| AB3473_RS07720 (AB3473_07725) | pgsA | 1589504..1590082 (-) | 579 | WP_002507829.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| AB3473_RS07725 (AB3473_07730) | - | 1590135..1590527 (-) | 393 | WP_002507830.1 | RodZ family helix-turn-helix domain-containing protein | - |
| AB3473_RS07730 (AB3473_07735) | - | 1590561..1591391 (-) | 831 | WP_002507831.1 | YmfK family protein | - |
| AB3473_RS07735 (AB3473_07740) | ymfI | 1591555..1592259 (-) | 705 | WP_002507832.1 | elongation factor P 5-aminopentanone reductase | - |
| AB3473_RS07740 (AB3473_07745) | yfmH | 1592261..1593547 (-) | 1287 | WP_002507833.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| AB3473_RS07745 (AB3473_07750) | yfmF | 1593547..1594836 (-) | 1290 | WP_002507834.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| AB3473_RS07750 (AB3473_07755) | - | 1594847..1595560 (-) | 714 | WP_002507835.1 | GntR family transcriptional regulator | - |
| AB3473_RS07755 | - | 1595563..1597008 (-) | 1446 | Protein_1492 | DNA translocase FtsK | - |
| AB3473_RS07760 | - | 1597188..1598013 (-) | 826 | Protein_1493 | DNA translocase FtsK 4TM domain-containing protein | - |
| AB3473_RS07765 (AB3473_07765) | rnjB | 1598321..1599994 (-) | 1674 | WP_046465284.1 | ribonuclease J2 | - |
| AB3473_RS07770 (AB3473_07770) | pnp | 1600394..1602493 (-) | 2100 | WP_398573901.1 | polyribonucleotide nucleotidyltransferase | - |
| AB3473_RS07775 (AB3473_07775) | rpsO | 1602648..1602917 (-) | 270 | WP_002507839.1 | 30S ribosomal protein S15 | - |
| AB3473_RS07780 (AB3473_07780) | ribF | 1603022..1603993 (-) | 972 | WP_002507840.1 | riboflavin biosynthesis protein RibF | - |
| AB3473_RS07785 (AB3473_07785) | truB | 1604007..1604924 (-) | 918 | WP_002507841.1 | tRNA pseudouridine(55) synthase TruB | - |
| AB3473_RS07790 (AB3473_07790) | rbfA | 1605053..1605400 (-) | 348 | WP_031265894.1 | 30S ribosome-binding factor RbfA | - |
| AB3473_RS07795 (AB3473_07795) | - | 1605836..1606708 (+) | 873 | WP_002507843.1 | HTH domain-containing protein | - |
| AB3473_RS07800 (AB3473_07800) | - | 1606773..1607771 (-) | 999 | WP_002507844.1 | hypothetical protein | - |
| AB3473_RS07805 (AB3473_07805) | infB | 1608293..1610404 (-) | 2112 | WP_398573902.1 | translation initiation factor IF-2 | - |
| AB3473_RS07810 (AB3473_07810) | - | 1610409..1610726 (-) | 318 | WP_002507846.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| AB3473_RS07815 (AB3473_07815) | rnpM | 1610723..1611007 (-) | 285 | WP_002507847.1 | RNase P modulator RnpM | - |
| AB3473_RS07820 (AB3473_07820) | nusA | 1611025..1612200 (-) | 1176 | WP_002507848.1 | transcription termination factor NusA | - |
| AB3473_RS07825 (AB3473_07825) | rimP | 1612224..1612691 (-) | 468 | WP_002507849.1 | ribosome maturation factor RimP | - |
| AB3473_RS07830 (AB3473_07830) | - | 1612859..1617175 (-) | 4317 | WP_398573903.1 | PolC-type DNA polymerase III | - |
| AB3473_RS07835 (AB3473_07835) | - | 1617539..1619239 (-) | 1701 | WP_002512313.1 | proline--tRNA ligase | - |
| AB3473_RS07840 (AB3473_07840) | rseP | 1619259..1620545 (-) | 1287 | WP_002507852.1 | RIP metalloprotease RseP | - |
| AB3473_RS07845 (AB3473_07845) | - | 1620873..1621655 (-) | 783 | WP_002507853.1 | phosphatidate cytidylyltransferase | - |
| AB3473_RS07850 (AB3473_07850) | - | 1621673..1622437 (-) | 765 | WP_002507854.1 | isoprenyl transferase | - |
| AB3473_RS07855 (AB3473_07855) | frr | 1622671..1623225 (-) | 555 | WP_002507855.1 | ribosome recycling factor | - |
| AB3473_RS07860 (AB3473_07860) | pyrH | 1623242..1623964 (-) | 723 | WP_002507856.1 | UMP kinase | - |
| AB3473_RS07865 (AB3473_07865) | tsf | 1624097..1624975 (-) | 879 | WP_002507857.1 | translation elongation factor Ts | - |
| AB3473_RS07870 (AB3473_07870) | rpsB | 1625070..1625858 (-) | 789 | WP_002507858.1 | 30S ribosomal protein S2 | - |
| AB3473_RS07875 (AB3473_07875) | codY | 1626110..1626883 (-) | 774 | WP_002507859.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| AB3473_RS07880 (AB3473_07880) | hslU | 1626907..1628322 (-) | 1416 | WP_002507860.1 | ATP-dependent protease ATPase subunit HslU | - |
| AB3473_RS07885 (AB3473_07885) | hslV | 1628456..1628998 (-) | 543 | WP_002507861.1 | ATP-dependent protease subunit HslV | - |
| AB3473_RS07890 (AB3473_07890) | xerC | 1629002..1629892 (-) | 891 | WP_002507862.1 | tyrosine recombinase XerC | - |
| AB3473_RS07895 (AB3473_07895) | trmFO | 1630011..1631318 (-) | 1308 | WP_398573904.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| AB3473_RS07900 (AB3473_07900) | topA | 1631484..1633553 (-) | 2070 | WP_002507864.1 | type I DNA topoisomerase | - |
| AB3473_RS07905 (AB3473_07905) | dprA | 1633763..1634632 (-) | 870 | WP_002512311.1 | DNA-processing protein DprA | - |
| AB3473_RS07910 (AB3473_07910) | sucD | 1635098..1636006 (-) | 909 | WP_002507866.1 | succinate--CoA ligase subunit alpha | - |
| AB3473_RS07915 (AB3473_07915) | sucC | 1636027..1637193 (-) | 1167 | WP_002507867.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| AB3473_RS07920 (AB3473_07920) | - | 1637301..1638071 (-) | 771 | WP_002512309.1 | ribonuclease HII | - |
| AB3473_RS07925 (AB3473_07925) | ylqF | 1638079..1638939 (-) | 861 | WP_002507869.1 | ribosome biogenesis GTPase YlqF | - |
| AB3473_RS07930 (AB3473_07930) | - | 1639324..1641921 (+) | 2598 | WP_398573905.1 | YfhO family protein | - |
| AB3473_RS07935 (AB3473_07935) | - | 1641958..1644573 (+) | 2616 | WP_197911118.1 | YfhO family protein | - |
| AB3473_RS07940 (AB3473_07940) | rplS | 1644990..1645340 (-) | 351 | WP_002507872.1 | 50S ribosomal protein L19 | - |
| AB3473_RS07945 (AB3473_07945) | trmD | 1645442..1646179 (-) | 738 | WP_002507873.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AB3473_RS07950 (AB3473_07950) | rimM | 1646179..1646682 (-) | 504 | WP_002507874.1 | ribosome maturation factor RimM | - |
| AB3473_RS07955 (AB3473_07955) | rpsP | 1646904..1647170 (-) | 267 | WP_002507875.1 | 30S ribosomal protein S16 | - |
| AB3473_RS07960 (AB3473_07960) | - | 1647658..1648410 (+) | 753 | WP_002507876.1 | 3-oxoacyl-ACP reductase | - |
| AB3473_RS07965 (AB3473_07965) | - | 1648437..1649750 (+) | 1314 | WP_398573906.1 | LLM class flavin-dependent oxidoreductase | - |
| AB3473_RS07970 (AB3473_07970) | ffh | 1650285..1651652 (-) | 1368 | WP_398573907.1 | signal recognition particle protein | - |
| AB3473_RS07975 (AB3473_07975) | - | 1651678..1652010 (-) | 333 | WP_002507879.1 | putative DNA-binding protein | - |
| AB3473_RS07980 (AB3473_07980) | ftsY | 1651997..1653229 (-) | 1233 | WP_002507880.1 | signal recognition particle-docking protein FtsY | - |
| AB3473_RS07985 (AB3473_07985) | smc | 1653226..1656795 (-) | 3570 | WP_002507881.1 | chromosome segregation protein SMC | - |
| AB3473_RS07990 (AB3473_07990) | rnc | 1656951..1657661 (-) | 711 | WP_370736906.1 | ribonuclease III | - |
| AB3473_RS07995 (AB3473_07995) | - | 1657897..1658130 (-) | 234 | WP_002507883.1 | acyl carrier protein | - |
| AB3473_RS08000 (AB3473_08000) | fabG | 1658380..1659114 (-) | 735 | WP_398573908.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| AB3473_RS08005 (AB3473_08005) | fabD | 1659107..1660033 (-) | 927 | WP_002507885.1 | ACP S-malonyltransferase | - |
| AB3473_RS08010 (AB3473_08010) | plsX | 1660026..1661012 (-) | 987 | WP_002507886.1 | phosphate acyltransferase PlsX | - |
| AB3473_RS08015 (AB3473_08015) | fapR | 1661005..1661574 (-) | 570 | WP_002507887.1 | transcription factor FapR | - |
| AB3473_RS08020 (AB3473_08020) | - | 1661915..1663474 (+) | 1560 | WP_398573909.1 | M4 family metallopeptidase | - |
| AB3473_RS08025 (AB3473_08025) | recG | 1664002..1666047 (-) | 2046 | WP_002512301.1 | ATP-dependent DNA helicase RecG | - |
| AB3473_RS08030 (AB3473_08030) | sdaAA | 1666050..1666919 (-) | 870 | WP_002507890.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37775.91 Da Isoelectric Point: 5.2212
>NTDB_id=1027030 AB3473_RS07710 WP_002507827.1 1586834..1587880(-) (recA) [Staphylococcus equorum strain UPB 1351]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKAQRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKTGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSKTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKLYLKENPEIKEDINR
RLREALGIIDGDVKEDESEKQTTLLEDE
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKAQRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKTGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSKTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKLYLKENPEIKEDINR
RLREALGIIDGDVKEDESEKQTTLLEDE
Nucleotide
Download Length: 1047 bp
>NTDB_id=1027030 AB3473_RS07710 WP_002507827.1 1586834..1587880(-) (recA) [Staphylococcus equorum strain UPB 1351]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGCGATAATAAAGCCCAAAGAGTGTCTAGCGTTTCAAGTGGTTCAGTTACTTTGGATAATGCTTTAGGTGTAGGTG
GCTACCCTAAAGGAAGAATTATAGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCATTACATGCTATTGCA
GAAGTACAAAAAACTGGTGGGATTGCGGCGTTTATTGATGCTGAACATGCGTTAGATCCTGTCTATGCAGAAGCTTTAGG
TGTAGATATTCAAAATCTATATTTATCTCAACCTGACCATGGGGAACAAGGATTGGAAATTGCCGAAGCATTCGTTAGAA
GTGGTGCTGTTGACATCGTAGTTGTTGACTCCGTTGCTGCGTTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCGCGTTTAATGTCACAAGCATTGCGTAAACTTTCAGGCGCTATTTCTAAATCAAAAACAAC
AGCAGTATTTATTAACCAAATTCGCGAAAAAGTAGGCGTGATGTTCGGTAATCCTGAAGTAACACCGGGTGGACGTGCAT
TGAAATTCTATAGTTCTGTACGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACGAAAATTAAAGTTGTTAAAAATAAAGTAGCACCGCCATTCAGAGTTGCAGAAGTGGATATGATGTATGGTAAAGGTAT
CTCTAAAGAAGGAGAACTTATTGACTTAGGTGTTGAAAATGAAATTGTAGATAAATCAGGTGCTTGGTATTCATACAATG
GAGATCGTATGGGACAAGGTAAAGAAAATGTTAAATTATATCTGAAAGAAAACCCTGAAATCAAAGAAGATATTAATCGT
AGATTGCGTGAAGCTCTAGGCATTATCGATGGTGATGTTAAAGAAGACGAAAGTGAAAAACAAACTACGCTTCTTGAAGA
TGAATAG
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGCGCAGTTATGAA
ATTAGGCGATAATAAAGCCCAAAGAGTGTCTAGCGTTTCAAGTGGTTCAGTTACTTTGGATAATGCTTTAGGTGTAGGTG
GCTACCCTAAAGGAAGAATTATAGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTAGCATTACATGCTATTGCA
GAAGTACAAAAAACTGGTGGGATTGCGGCGTTTATTGATGCTGAACATGCGTTAGATCCTGTCTATGCAGAAGCTTTAGG
TGTAGATATTCAAAATCTATATTTATCTCAACCTGACCATGGGGAACAAGGATTGGAAATTGCCGAAGCATTCGTTAGAA
GTGGTGCTGTTGACATCGTAGTTGTTGACTCCGTTGCTGCGTTAACTCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCGCGTTTAATGTCACAAGCATTGCGTAAACTTTCAGGCGCTATTTCTAAATCAAAAACAAC
AGCAGTATTTATTAACCAAATTCGCGAAAAAGTAGGCGTGATGTTCGGTAATCCTGAAGTAACACCGGGTGGACGTGCAT
TGAAATTCTATAGTTCTGTACGTTTAGAAGTACGTCGTGCTGAACAATTAAAACAAGGCCAAGATATTGTTGGTAATAGA
ACGAAAATTAAAGTTGTTAAAAATAAAGTAGCACCGCCATTCAGAGTTGCAGAAGTGGATATGATGTATGGTAAAGGTAT
CTCTAAAGAAGGAGAACTTATTGACTTAGGTGTTGAAAATGAAATTGTAGATAAATCAGGTGCTTGGTATTCATACAATG
GAGATCGTATGGGACAAGGTAAAGAAAATGTTAAATTATATCTGAAAGAAAACCCTGAAATCAAAGAAGATATTAATCGT
AGATTGCGTGAAGCTCTAGGCATTATCGATGGTGATGTTAAAGAAGACGAAAGTGAAAAACAAACTACGCTTCTTGAAGA
TGAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.