Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3476_RS10180 Genome accession   NZ_CP162522
Coordinates   2108838..2109887 (-) Length   349 a.a.
NCBI ID   WP_061017554.1    Uniprot ID   A0A7Y9MZA7
Organism   Microbacterium oxydans strain UPB 460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2103838..2114887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3476_RS10155 (AB3476_10155) dapF 2103956..2104828 (-) 873 WP_061017561.1 diaminopimelate epimerase -
  AB3476_RS10160 (AB3476_10160) - 2104864..2105400 (-) 537 WP_058630540.1 dihydrofolate reductase family protein -
  AB3476_RS10165 (AB3476_10165) miaA 2105452..2106363 (-) 912 WP_058630539.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  AB3476_RS10170 (AB3476_10170) miaB 2106360..2107907 (-) 1548 WP_058630665.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AB3476_RS10175 (AB3476_10175) - 2107957..2108430 (-) 474 WP_396656974.1 regulatory protein RecX -
  AB3476_RS10180 (AB3476_10180) recA 2108838..2109887 (-) 1050 WP_061017554.1 recombinase RecA Machinery gene
  AB3476_RS10185 (AB3476_10185) - 2110154..2110378 (-) 225 WP_113680796.1 DUF3046 domain-containing protein -
  AB3476_RS10190 (AB3476_10190) - 2110397..2110705 (-) 309 WP_396656977.1 helix-turn-helix domain-containing protein -
  AB3476_RS10195 (AB3476_10195) - 2110847..2111332 (-) 486 WP_046748326.1 CinA family protein -
  AB3476_RS10200 (AB3476_10200) pgsA 2111329..2111904 (-) 576 WP_058630535.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3476_RS10205 (AB3476_10205) - 2111904..2114639 (-) 2736 WP_113680786.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37072.33 Da        Isoelectric Point: 5.5016

>NTDB_id=1026927 AB3476_RS10180 WP_061017554.1 2108838..2109887(-) (recA) [Microbacterium oxydans strain UPB 460]
MPSPADREKSLETALAQIDRQFGKGSVMRLGSDERAPVAVIPTGSIALDVALGVGGLPRGRIVEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPDYAAKLGVDIDALLVSQPDTGEQALEIADMLVRSGAIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTNTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRMDIRRIETLKDGTDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHAIVKKSGSWYTYDGDQLGQGKENARTFLLNNPDIALAI
ETQIKQKLGIGGPSAAPAAADELAERRPA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1026927 AB3476_RS10180 WP_061017554.1 2108838..2109887(-) (recA) [Microbacterium oxydans strain UPB 460]
ATGCCATCACCCGCCGACCGCGAGAAGTCCCTCGAGACCGCCCTCGCTCAGATCGACCGCCAGTTCGGAAAGGGCTCGGT
CATGCGGCTGGGCAGCGATGAGCGTGCCCCTGTGGCCGTCATCCCGACCGGCTCCATCGCCCTCGACGTCGCCCTCGGCG
TGGGAGGACTGCCGCGTGGCCGAATCGTAGAGATCTACGGACCGGAGTCCTCGGGTAAGACGACTCTCACGCTGCACGCG
ATCGCCAACGCTCAGCGGGCCGGGGGAATCGCGGCGTTCATCGATGCCGAGCACGCGCTCGACCCCGACTATGCCGCGAA
GCTGGGCGTCGACATCGATGCTCTCCTGGTGTCGCAGCCCGACACCGGTGAGCAGGCACTCGAGATCGCCGACATGCTGG
TGCGCTCCGGAGCCATCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCTCGTGCCGAGATCGAGGGCGAGATG
GGCGACTCGCACGTGGGTCTGCAGGCGCGACTCATGTCGCAGGCCCTTCGTAAGCTCACCGGTGGTCTGAACCAGACCAA
CACCACCATGATCTTCATCAACCAGCTGCGTGAGAAGATCGGCGTCTTCTTCGGTTCCCCCGAGACCACCGCCGGCGGTA
AGGCGCTGAAGTTCTACGCCTCGGTCCGCATGGACATCCGTCGTATCGAGACGCTGAAGGACGGAACCGATGCCGTCGGA
AACCGCACCAGGGTCAAGGTCGTGAAGAACAAGATGGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGCGT
CGGCATCTCCCGCGAAGGCAGCCTGATCGACTTCGGCGTCGAACACGCCATCGTGAAGAAGTCGGGTTCCTGGTACACCT
ATGACGGTGATCAGCTGGGTCAGGGCAAGGAGAACGCACGCACGTTCCTGCTCAACAACCCCGACATCGCTCTGGCTATC
GAGACGCAGATCAAGCAGAAGCTCGGTATCGGCGGGCCGTCCGCTGCCCCGGCCGCTGCCGATGAGCTCGCAGAGCGTCG
TCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y9MZA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.976

96.848

0.639
  recA Acinetobacter baylyi ADP1

65.294

97.421

0.636
  recA Ralstonia pseudosolanacearum GMI1000

67.073

93.983

0.63
  recA Acinetobacter baumannii D1279779

64.985

96.562

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

93.41

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

92.55

0.613
  recA Vibrio cholerae strain A1552

66.254

92.55

0.613
  recA Neisseria gonorrhoeae MS11

65.644

93.41

0.613
  recA Neisseria gonorrhoeae MS11

65.644

93.41

0.613
  recA Neisseria gonorrhoeae strain FA1090

65.644

93.41

0.613
  recA Streptococcus mitis NCTC 12261

60.405

99.14

0.599
  recA Streptococcus mitis SK321

60.405

99.14

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

93.983

0.596
  recA Glaesserella parasuis strain SC1401

61.062

97.135

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

63.077

93.123

0.587
  recA Helicobacter pylori strain NCTC11637

61.212

94.556

0.579
  recA Helicobacter pylori 26695

61.212

94.556

0.579
  recA Streptococcus pneumoniae Rx1

61.212

94.556

0.579
  recA Streptococcus pneumoniae D39

61.212

94.556

0.579
  recA Streptococcus pneumoniae R6

61.212

94.556

0.579
  recA Streptococcus pneumoniae TIGR4

61.212

94.556

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

94.269

0.573
  recA Streptococcus mutans UA159

60.486

94.269

0.57
  recA Lactococcus lactis subsp. cremoris KW2

60

94.556

0.567
  recA Streptococcus pyogenes NZ131

60.061

93.983

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

91.691

0.547

Multiple sequence alignment