Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB1I49_RS08980 Genome accession   NZ_CP162391
Coordinates   1828068..1829210 (+) Length   380 a.a.
NCBI ID   WP_186834269.1    Uniprot ID   -
Organism   Ruminococcus sp. JE7B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1823068..1834210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1I49_RS08960 - 1823853..1824560 (+) 708 WP_316609304.1 response regulator transcription factor -
  AB1I49_RS08965 - 1824599..1826071 (+) 1473 WP_316609305.1 HAMP domain-containing sensor histidine kinase -
  AB1I49_RS08970 - 1826126..1827124 (+) 999 WP_186834271.1 DUF1385 domain-containing protein -
  AB1I49_RS08975 prmC 1827118..1827945 (+) 828 WP_407720765.1 peptide chain release factor N(5)-glutamine methyltransferase -
  AB1I49_RS08980 recA 1828068..1829210 (+) 1143 WP_186834269.1 recombinase RecA Machinery gene
  AB1I49_RS08985 - 1829210..1829803 (+) 594 WP_186834268.1 RecX family transcriptional regulator -
  AB1I49_RS08990 rimO 1829881..1831212 (+) 1332 WP_407720767.1 30S ribosomal protein S12 methylthiotransferase RimO -
  AB1I49_RS08995 pgsA 1831226..1831828 (+) 603 WP_186834266.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB1I49_RS09000 cysE 1831844..1832482 (+) 639 WP_186834265.1 serine O-acetyltransferase -
  AB1I49_RS09005 cysS 1832486..1833892 (+) 1407 WP_407720768.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40946.91 Da        Isoelectric Point: 5.9732

>NTDB_id=1025032 AB1I49_RS08980 WP_186834269.1 1828068..1829210(+) (recA) [Ruminococcus sp. JE7B6]
MAMDKQTALDTAIKQLEKQFGKGAVMRLGENTHMNVEHISTGSLSLDVALGIGGLPRGRIVEIYGPESSGKTTLSLHCIA
EGQKNGGNVAFIDVEHALDPVYAEALGVNINELLVSQPDTGEDALEIAEGLIRSGAIDVIVIDSVAALVPKAEIEGEMGD
SHVGLHARLMSQALRKLAGAINKSNCVAIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIEIRKGEAIKVNGEIIGNH
TKAKVVKNKIAPPFKVAEFDIMYGEGISREGELLDMAVEAEVVQKAGAWFSYKTQRLGQGRDKVKELFRNDPELAKQIET
ELWENIDKLYAKTSPRAKAKAAAAAATEAPKAEEEKPEQKPASKKAASTKPVNIDIMVEE

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1025032 AB1I49_RS08980 WP_186834269.1 1828068..1829210(+) (recA) [Ruminococcus sp. JE7B6]
ATGGCAATGGATAAACAAACCGCGCTTGACACCGCGATCAAGCAGCTTGAAAAGCAGTTCGGCAAGGGCGCTGTAATGCG
TCTCGGCGAAAATACACATATGAACGTTGAGCACATCTCGACAGGCTCCCTCTCCCTCGACGTCGCTCTCGGCATCGGCG
GACTTCCCAGAGGACGTATCGTAGAGATCTACGGGCCCGAGTCCTCGGGTAAAACCACCCTCTCGCTGCACTGCATTGCT
GAGGGTCAGAAAAACGGCGGCAACGTCGCGTTTATCGACGTTGAGCACGCGCTCGATCCCGTATACGCGGAGGCTTTGGG
CGTAAACATCAACGAGCTTCTCGTTTCACAGCCCGACACAGGCGAGGACGCGCTCGAAATCGCCGAGGGACTTATCCGAA
GCGGCGCGATCGACGTTATCGTAATCGACTCCGTAGCGGCTCTCGTTCCCAAGGCTGAAATCGAGGGCGAGATGGGCGAC
AGCCACGTAGGTCTGCACGCTCGTCTTATGTCCCAGGCGCTCAGAAAGCTCGCCGGCGCTATCAACAAGAGCAACTGCGT
GGCTATCTTCATCAACCAGCTGCGCGAGAAGGTCGGCGTTGTCTACGGAAACCCCGAGGTCACCACAGGTGGCCGCGCGC
TCAAGTTCTACAGCTCCGTCCGCATCGAGATCCGCAAGGGCGAGGCTATCAAGGTCAACGGCGAAATCATCGGCAACCAC
ACCAAGGCAAAGGTCGTAAAGAATAAAATCGCTCCGCCCTTCAAGGTAGCGGAGTTCGATATCATGTACGGCGAGGGCAT
TTCGCGCGAGGGCGAGCTGCTCGATATGGCGGTCGAGGCCGAGGTCGTACAGAAGGCAGGCGCGTGGTTCAGCTACAAGA
CCCAGCGTCTCGGACAGGGCCGCGACAAGGTCAAGGAGCTGTTCAGAAACGACCCCGAGCTCGCTAAGCAGATCGAAACC
GAGCTGTGGGAGAATATCGACAAGCTCTACGCAAAGACCTCGCCCAGAGCGAAGGCTAAGGCAGCGGCAGCAGCGGCAAC
GGAAGCTCCCAAGGCTGAGGAAGAAAAGCCCGAGCAGAAGCCCGCTTCGAAGAAGGCGGCTTCCACAAAGCCCGTCAATA
TTGACATCATGGTTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

66.46

84.737

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.284

88.158

0.558
  recA Acinetobacter baylyi ADP1

61.652

89.211

0.55
  recA Vibrio cholerae strain A1552

64.198

85.263

0.547
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.198

85.263

0.547
  recA Helicobacter pylori strain NCTC11637

63.58

85.263

0.542
  recA Helicobacter pylori 26695

63.272

85.263

0.539
  recA Latilactobacillus sakei subsp. sakei 23K

64.263

83.947

0.539
  recA Acinetobacter baumannii D1279779

62.883

85.789

0.539
  recA Glaesserella parasuis strain SC1401

57.746

93.421

0.539
  recA Pseudomonas stutzeri DSM 10701

57.345

93.158

0.534
  recA Streptococcus pyogenes NZ131

62.229

85

0.529
  recA Ralstonia pseudosolanacearum GMI1000

64.63

81.842

0.529
  recA Neisseria gonorrhoeae MS11

61.92

85

0.526
  recA Neisseria gonorrhoeae MS11

61.92

85

0.526
  recA Neisseria gonorrhoeae strain FA1090

61.92

85

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.696

83.947

0.526
  recA Streptococcus mutans UA159

62.5

84.211

0.526
  recA Lactococcus lactis subsp. cremoris KW2

61.562

84.211

0.518
  recA Streptococcus mitis NCTC 12261

60.372

85

0.513
  recA Streptococcus mitis SK321

60.372

85

0.513
  recA Streptococcus pneumoniae Rx1

60.372

85

0.513
  recA Streptococcus pneumoniae D39

60.372

85

0.513
  recA Streptococcus pneumoniae R6

60.372

85

0.513
  recA Streptococcus pneumoniae TIGR4

60.372

85

0.513
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.669

85.789

0.495

Multiple sequence alignment